Skip Navigation



Bioinformatics Advance Access published online on June 1, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm112
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrowOA All Versions of this Article:
23/16/2198    most recent
btm112v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Google Scholar
Right arrow Articles by Day-Richter, J.
Right arrow Articles by Lewis, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Day-Richter, J.
Right arrow Articles by Lewis, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

OBO-Edit – An Ontology Editor for Biologists

John Day-Richter 1,*, Midori A. Harris 2, Melissa Haendel 3, The Gene Ontology OBO-Edit Working Group4 and Suzanna Lewis 1

1Berkeley Bioinformatics and Ontology Project, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720 USA, 2GO Editorial Office, EMBL Outstation—European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK, 3Zebrafish Information Network, University of Oregon, Eugene, OR 97403, USA, and 4Gene Ontology Consortium, geneontology-oboedit-working-group@lists.sourceforge.net

*To whom correspondence should be addressed. Mr. John Day-Richter, E-mail: jrichter{at}berkeleybop.org, gohelp{at}geneontology.org


  Abstract

Summary: OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies.

Availability: https://sourceforge.net/project/showfiles.php?group_id=36855

Associate Editor: Dr. Alex Bateman

Received on October 10, 2006; revised on February 9, 2007; accepted on March 15, 2007

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
The Gene Ontology Consortium
The Gene Ontology in 2010: extensions and refinements
Nucleic Acids Res., November 17, 2009; (2009) gkp1018v1.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
G. A. Reeves, K. Eilbeck, M. Magrane, C. O'Donovan, L. Montecchi-Palazzi, M. A. Harris, S. Orchard, R. C. Jimenez, A. Prlic, T. J. P. Hubbard, et al.
The Protein Feature Ontology: a tool for the unification of protein feature annotations
Bioinformatics, December 1, 2008; 24(23): 2767 - 2772.
[Abstract] [Full Text] [PDF]

Home page
 J ANIM SCIHome page
L. M. Hughes, J. Bao, Z.-L. Hu, V. Honavar, and J. M. Reecy
Animal trait ontology: The importance and usefulness of a unified trait vocabulary for animal species
J Anim Sci, June 1, 2008; 86(6): 1485 - 1491.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
E. Antezana, M. Egana, B. De Baets, M. Kuiper, and V. Mironov
ONTO-PERL: An API for supporting the development and analysis of bio-ontologies
Bioinformatics, March 15, 2008; 24(6): 885 - 887.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
S. Aitken, Y. Chen, and J. Bard
OBO Explorer: an editor for open biomedical ontologies in OWL
Bioinformatics, February 1, 2008; 24(3): 443 - 444.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Degtyarenko, P. de Matos, M. Ennis, J. Hastings, M. Zbinden, A. McNaught, R. Alcantara, M. Darsow, M. Guedj, and M. Ashburner
ChEBI: a database and ontology for chemical entities of biological interest
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D344 - D350.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
The Gene Ontology Consortium
The Gene Ontology project in 2008
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D440 - D444.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.