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Bioinformatics Advance Access published online on March 28, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm113
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

DPTF: a database of poplar transcription factors

Qi-Hui Zhu 1, An-Yuan Guo 1, Ge Gao 1, Ying-Fu Zhong 1, Meng Xu 2, Minren Huang 2 and Jinchu Luo 1,*

1Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering and College of Life Sciences, Peking University, Beijing 100871, P. R. China
2The Key Laboratory of Forest Genetics and Gene Engineering, Nanjing Forest University, Nanjing, 210037, China

*To whom correspondence should be addressed. Jinchu Luo, E-mail: luojc{at}mail.cbi.pku.edu.cn


  Abstract

Summary: DPTF is a plant transcription factor (TF) database containing 2,576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome scale comparative studies of transcriptional regulation in model plants.

Availability: DPTF is available at http://dptf.cbi.pku.edu.cn

Associate Editor: Dr. Alex Bateman

Received on November 27, 2006; revised on March 12, 2007; accepted on March 15, 2007

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