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Bioinformatics Advance Access first published online on May 5, 2007
This version published online on May 5, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm132
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

PQuad - a visual analysis platform for proteomic data exploration of microbial organisms

Bobbie-Jo M. Webb-Robertson 1,*, Elena S. Peterson 1, Mudita Singhal 1, Kyle R. Klicker 1, Christopher S. Oehmen 1, Joshua N. Adkins 2 and Susan L. Havre 1

1Computational Biology and Bioinformatics, Pacific Northwest National Laboratory, Richland, WA
2Biological Sciences, Pacific Northwest National Laboratory, Richland, WA

*To whom correspondence should be addressed. Dr. Bobbie-Jo Webb-Robertson, E-mail: bj{at}pnl.gov


  Abstract

Summary: The visual Platform for Proteomics Peptide and Protein data exploration (PQuad) is a multi-resolution environment that visually integrates genomic and proteomic data for prokaryotic systems, overlays categorical annotation and compares differential expression experiments. PQuad requires Java 1.5 and has been tested to run across different operating systems.

Availability: http://ncrr.pnl.gov/software

Associate Editor: Prof. Thomas Lengauer

Received on November 16, 2006; revised on March 29, 2007; accepted on March 30, 2007

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