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Bioinformatics Advance Access first published online on May 8, 2007
This version published online on May 22, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm243
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MODELER4SIMCOAL2: A user-friendly, extensible modeler of demography and linked loci for coalescent simulations

T. Antao a,c,*, A. Beja-Pereira a and G. Luikart a,b

aCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairáo, Universidade do Porto, Portugal
bDivision of Biological Sciences, University of Montana, Missoula, MT 59812, USA
cDepartamento de Zoologia e Antropologia, Faculdade de Ciências do Porto, Portugal

*To whom correspondence should be addressed. Mr. Tiago Antao, E-mail: tra{at}fc.up.pt


  Abstract

Summary:MODELER4SIMCOAL2 (M4S2) is an extensible graphical tool to model linked loci and population demographies. M4S2 is easy to use, allowing for the modeling of complicated scenarios, making coalescent simulation modeling accessible to biologists with limited computer skills. The software includes an extension system allowing for new models to be created, published and downloaded from the Internet.

Availability: M4S2 is available from http://popgen.eu/soft/m4s2 under a GPL license. The website also contains guides, screen shots and tutorials.

Associate Editor: Prof. Martin Bishop

Received on March 12, 2007; revised on April 11, 2007; accepted on April 27, 2007

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