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Bioinformatics Advance Access published online on June 6, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm304
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins

Lukasz Salwinski and David Eisenberg *

UCLA-DOE Institute for Genomics & Proteomics, Departments of Chemistry and Biochemistry and Biological Chemistry,Howard Hughes Medical Institute Box 951570, UCLA, Los Angeles, CA 90095.

*To whom correspondence should be addressed. David Eisenberg, E-mail: lukasz{at}mbi.ucla.edu, david{at}mbi.ucla.edu


  Abstract

Summary: The MiSink Plugin converts Cytoscape, an open-source bioinformatics platform for network visualization, to a graphical inter-face for the Database of Interacting Proteins (DIP: http://dip.doe-mbi.ucla.edu). Seamless integration is possible by providing bi-directional communication between Cytoscape and any Web site supplying data in XML or tab-delimited format.

Availability: MiSink is freely available for download at http://dip.doembi.ucla.edu/Software.cgi.

Associate Editor: Dr. Olga Troyanskaya

Received on March 28, 2007; revised on May 21, 2007; accepted on May 31, 2007

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[Abstract] [Full Text] [PDF]


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