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Bioinformatics Advance Access published online on June 22, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm321
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MAnGO: an interactive R-based tool for two-colour microarray analysis

Laetitia Marisa 1, Jean-Laurent Ichanté 1, Nancie Reymond 1,2,*, Lawrence Aggerbeck 1, Hervé Delacroix 1,2 and Marie-Hélène Mucchielli-Giorgi 1,3

1Centre de Génétique Moléculaire, CNRS UPR2167 and Gif/Orsay DNA Microarray Platform (GODMAP), 91190 Gif-sur-Yvette, France.
2Univ Paris-Sud, 91405 Orsay, France.
3Univ Pierre and Marie Curie, 75005 Paris, France.

*To whom correspondence should be addressed. Dr. Nancie Reymond, E-mail: reymond{at}cgm.cnrs-gif.fr


  Abstract

Summary: MAnGO (Microarray Analysis at the Gif/Orsay platform) is an interactive R-based tool for the analysis of two-colour microarray experiments. It is a compilation of various methods, which allows the user (1) to control data quality by detecting biases with a large number of visual representations, (2) to pre-process data (filtering and normalisation) and (3) to carry out differential analyses. MAnGO is not only a "turn-key" tool, oriented towards biologists but also a flexible and adaptable R script oriented towards bioinformaticians.

Availability: http://bioinfome.cgm.cnrs-gif.fr/

Associate Editor: Prof. David Rocke

Received on April 15, 2007; revised on June 5, 2007; accepted on May 8, 2007

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