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Bioinformatics Advance Access first published online on June 22, 2007
This version published online on July 5, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm331
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

ViroBLAST: A standalone BLAST web server for flexible queries of multiple databases and user’s datasets

Wenjie Deng , David C. Nickle , Gerald H. Learn , Brandon Maust and James I. Mullins *

Department of Microbiology, University of Washington School of Medicine, Seattle, WA 98195, USA

*To whom correspondence should be addressed. James I. Mullins, E-mail: jmullins{at}u.washington.edu


  Abstract

Summary: ViroBLAST is a standalone BLAST web interface for nucleotide and amino acid sequence similarity searches. It extends the utility of BLAST to query against multiple sequence databases and user sequence datasets, and provides a friendly output to easily parse and navigate BLAST results. ViroBLAST is readily useful for all research areas that require BLAST functions and is available online and as a downloadable archive for independent installation.

Availability: http://indra.mullins.microbiol.washington.edu/blast/viroblast.php

Associate Editor: Prof. Thomas Lengauer

Received on April 7, 2007; revised on June 7, 2007; accepted on June 16, 2007

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