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Bioinformatics Advance Access published online on September 24, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm455
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat

Taishin Kin * and Yukiteru Ono 1

Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), 2-42 Aomi, Koto-ku, Tokyo, 135-0064, Japan.
1Information and Mathematical Science Laboratory, Inc. 1-5-21 Meikei Bldg. Otsuka, Bunkyo-ku, Tokyo, 112-0012, Japan.

*To whom correspondence should be addressed. Dr. Taishin Kin, E-mail: kin-taishin{at}aist.go.jp


  Abstract

Summary: We have launched a web server which serves as a general purpose idiogram rendering service, and allows users to generate high-quality idiograms with custom annotation according to their own genome-wide mapping/annotation data through an easy-to-use interface. The generated idiograms are suitable not only for visualizing summaries of genome-wide analysis but also for many types of presentation material including web pages, conference posters, oral presentations, etc.

Availability: Idiographica is freely available at http://www.ncrna.org/idiographica/

Contact: kin-taishin{at}aist.go.jp

Associate Editor: Dr. Chris Stoeckert

Received on May 22, 2007; revised on August 6, 2007; accepted on August 29, 2007

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