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Bioinformatics Advance Access published online on September 17, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm469
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language

Remo Sanges 1,#, Francesca Cordero 2,# and Raffaele A. Calogero 3,*

1CBM (Cluster in Biomedicine) - Basovizza SS 14, km 163,5 34012 Trieste (Italy).
2Department of Informatics, Corso Svizzera 185, 10149 Torino (Italy).
3Department of Clinical and Biological Sciences, Regione Gonzole 10, 10043 Orbassano, Torino (Italy).

*To whom correspondence should be addressed. Prof. Raffaele A. Calogero, E-mail: raffaele.calogero{at}unito.it


  Abstract

Summary: OneChannelGUI is an add-on Bioconductor package providing a new set of functions extending the capability of the affylmGUI package. This library provides a graphical interface (GUI) for Bioconductor libraries to be used for quality control, normalization, filtering, statistical validation and data mining for single channel microarrays. Affymetrix 3' expression (IVT) arrays as well as the new whole transcript expression arrays, i.e. gene/exon 1.0 ST, are actually implemented. oneChannelGUI is available for most platforms on which R runs, i.e. Windows and Unix-like machines.

Availability: http://www.bioconductor.org/packages/2.0/bioc/html/oneChannelGUI.html

Contact: raffaele.calogero{at}unito.it

Supplementary information: http://www.bioinformatica.unito.it/oneChannelGUI/

Associate Editor: Prof. David Rocke

#Both authors equally contributed to the present paper.

Received on May 26, 2007; revised on August 27, 2007; accepted on September 10, 2007

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