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Bioinformatics Advance Access published online on October 31, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm519
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

NPIDB, a Database of Nucleic Acids – Protein Interactions

Sergei Spirin 1,*, Mikhail Titov 2, Anna Karyagina 2,3 and Andrei Alexeevski 1

1A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology, Moscow, Russia and, 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia

*To whom correspondence should be addressed. Dr. Sergei Spirin, E-mail: sas{at}belozersky.msu.ru


  Abstract

Summary: The database NPIDB (Nucleic acid - Protein Interaction DataBase) contains information derived from structures of DNA-protein and RNA-protein complexes extracted from PDB (1834 complexes in July, 2007). It is organized as a collection of files in PDB format and is equipped with a web-interface and a set of tools for extracting biologically meaningful characteristics of complexes. The content of the database is weekly updated.

Availability: http://monkey.belozersky.msu.ru/NPIDB/

Contact: sas{at}belozersky.msu.ru

Associate Editor: Dr. Alex Bateman

Received on June 2, 2007; revised on August 28, 2007; accepted on October 12, 2007

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