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Bioinformatics Advance Access published online on November 14, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm536
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© The Author (2007). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MetaNetter: inference and visualization of high-resolution metabolomic networks.

Fabien Jourdan a,*, Rainer Breitling b, Michael P. Barrett c and David Gilbert d

aUMR1089 Xénobiotiques INRA-ENVT, 180 chemin de Tournefeuille, St-Martin-du-Touch, BP3 31931 Toulouse, France, bGroningen Bioinformatics Centre, University of Groningen, 9751NN Haren, The Netherlands, cInstitute of Biomedical and Life Sciences, University of Glasgow, dBioinformatics Research Centre, University of Glasgow, Glasgow G12 8QQ, UK

*To whom correspondence should be addressed. Dr. Fabien Jourdan, E-mail: Fabien.Jourdan{at}toulouse.inra.fr


  Abstract

Summary: We present a Cytoscape plugin for the inference and visualization of networks from high-resolution mass spectrometry metabolomic data. The software also provides access to basic topological analysis. This open source, multi-platform software has been successfully used to interpret metabolomic experiments and will enable others using filtered, high mass accuracy mass spectrometric data sets to build and analyse networks.

Availability: http://compbio.dcs.gla.ac.uk/fabien/abinitio/abinitio.html

Supplementary material: http://compbio.dcs.gla.ac.uk/fabien/abinitio/doc/Supplementary.pdf

Contact: Fabien.Jourdan{at}toulouse.inra.fr

Associate Editor: Prof. Thomas Lengauer

Received on August 9, 2007; revised on October 9, 2007; accepted on October 17, 2007

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