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Bioinformatics Advance Access published online on November 24, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm556
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© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

RReportGenerator : Automatic reports from routine statistical analysis using R

Wolfgang Raffelsberger 1,*,{dagger}, Yannick Krause 1,{dagger}, Luc Moulinier 1, David Kieffer 1, Anne-Laure Morand 2, Laurent Brino 2 and Olivier Poch 1

1Laboratoire de Bioinformatique et Génomique Intégratives, IGBMC, 67404 Illkirch, France; 2Plate-forme "Puces à Cellules Transfectées", LBGS, CEBGS-IGBMC, 67404 Illkirch, France

*To whom correspondence should be addressed. Dr. Wolfgang Raffelsberger, E-mail: wolfgang.raffelsberger{at}igbmc.u-strasbg.fr


  Abstract

Summary: With the establishment of high-throughput screening methods there is an increasing need for automatic analysis methods. Here we present RReportGenerator, a user-friendly portal for automatic routine analysis using the statistical platform R and Bioconductor. RReportGenerator is designed to analyze data using predefined analysis scenarios via a graphical user interface (GUI). A report in pdf-format combining text, figures and tables is automatically generated and results may be exported. To demonstrate suitable analysis tasks we provide direct web-access to a collection of analysis scenarios for summarizing data from transfected cell arrays (TCA), segmentation of CGH data, and microarray quality control and normalization.

Availability: RReportGenerator, a user-manual and a collection of analysis scenarios are available under a GNU public license on http://www-bio3d-igbmc.u-strasbg.fr/~wraff

Contact: wolfgang.raffelsberger{at}igbmc.u-strasbg.fr

Associate Editor: Dr. Chris Stoeckert

{dagger}The first two authors are to be regarded as joint first authors

Received on June 28, 2007; revised on November 2, 2007; accepted on November 2, 2007

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