Skip Navigation



Bioinformatics Advance Access published online on November 19, 2007
Bioinformatics, doi:10.1093/bioinformatics/btm566
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrowOA All Versions of this Article:
24/2/285    most recent
btm566v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Google Scholar
Right arrow Articles by Evans, T. W.
Right arrow Articles by Wilkinson, D. J.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Evans, T. W.
Right arrow Articles by Wilkinson, D. J.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© 2007 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

The SBML Discrete Stochastic Models Test Suite

Thomas W. Evans 1, Colin S. Gillespie 2,3 and Darren J. Wilkinson 2,3,*

1Department of Mathematical Sciences, University of Liverpool, Liverpool, L69 7ZL.
2School of Mathematics & Statistics, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
3Centre for Integrated Systems Biology of Ageing and Nutrition (CISBAN), Newcastle University.

*To whom correspondence should be addressed. Darren J. Wilkinson, E-mail: d.j.wilkinson{at}ncl.ac.uk


  Abstract

Motivation: Stochastic simulation is a very important tool for mathematical modelling. However it is difficult to check the correctness of a stochastic simulator, since any two realisations from a single model will typically be different.

Results: We have developed a test suite of stochastic models which have been solved either analytically or using numerical methods. This allows the accuracy of stochastic simulators to be tested against known results. The test suite is already being used by a number of stochastic simulator developers.

Availability: The latest version of the test suite can be obtained from http://www.calibayes.ncl.ac.uk/Resources/dsmts/ and is licensed under GNU Lesser General Public License.

Contact: d.j.wilkinson{at}ncl.ac.uk

Associate Editor: Prof. Thomas Lengauer

Received on September 17, 2007; revised on October 18, 2007; accepted on November 7, 2007

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.