Skip Navigation



Bioinformatics Advance Access published online on January 28, 2008
Bioinformatics, doi:10.1093/bioinformatics/btm619
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow All Versions of this Article:
24/5/715    most recent
btm619v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by A. Smith, S.
Right arrow Articles by W. Dunn, C.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by A. Smith, S.
Right arrow Articles by W. Dunn, C.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Phyutility: a phyloinformatics tool for trees, alignments, and molecular data

Stephen A. Smith 1,* and Casey W. Dunn 2

1Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06520, USA
2Department of Ecology and Evolutionary Biology, Brown University, Providence, RI, 02912, USA

*To whom correspondence should be addressed. Mr. Stephen A. Smith, E-mail: stephen.Smith{at}yale.edu


  Abstract

Summary: Phyutility provides a set of phyloinformatics tools for summarizing and manipulating phylogenetic trees, manipulating molecular data, and retrieving data from NCBI. Its simple command-line interface allows for easy integration into scriptableed analyses, and is able to handle large datasets with an integrated database.

Availability: Phyutility, including source code, documentation, examples, and executables, is available at http://code.google.com/p/phyutility.

Contact: stephen.smith{at}yale.edu

Associate Editor: Prof. Keith Crandall

Received on October 10, 2007; revised on November 19, 2007; accepted on December 10, 2007

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Proc R Soc BHome page
A. Hejnol, M. Obst, A. Stamatakis, M. Ott, G. W. Rouse, G. D. Edgecombe, P. Martinez, J. Baguna, X. Bailly, U. Jondelius, et al.
Assessing the root of bilaterian animals with scalable phylogenomic methods
Proc R Soc B, December 22, 2009; 276(1677): 4261 - 4270.
[Abstract] [Full Text] [PDF]

Home page
 Proc R Soc BHome page
E. Kazancioglu, T. J. Near, R. Hanel, and P. C. Wainwright
Influence of sexual selection and feeding functional morphology on diversification rate of parrotfishes (Scaridae)
Proc R Soc B, October 7, 2009; 276(1672): 3439 - 3446.
[Abstract] [Full Text] [PDF]

Home page
 Syst BiolHome page
C. M. Bossu and T. J. Near
Gene Trees Reveal Repeated Instances of Mitochondrial DNA Introgression in Orangethroat Darters (Percidae: Etheostoma)
Syst Biol, May 22, 2009; (2009) syp014v1.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.