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Bioinformatics Advance Access published online on February 5, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn051
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© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

LibSBML: An API Library for SBML

Benjamin J. Bornstein 1,+, Sarah M. Keating 2,*,+, Akiya Jouraku 3 and Michael Hucka 2

1NASA Jet Propulsion Laboratory, Pasadena, CA, USA.
2Biological Network Modeling Center, California Institute of Technology, Pasadena, CA, USA.
3School of Fundamental Science and Technology, Keio University, Yokohama, Japan.

*To whom correspondence should be addressed.Dr. Sarah M. Keating, E-mail: skeating{at}caltech.edu


  Abstract

Summary: LibSBML is an application programming interface library for reading, writing, manipulating and validating content expressed in the Systems Biology Markup Language (SBML) format. It is written in ISO C and C++, provides language bindings for Common Lisp, Java, Python, Perl, MATLAB and Octave, and includes many features that facilitate adoption and use of both SBML and the li-brary. Developers can embed libSBML in their applications, saving themselves the work of implementing their own SBML parsing, ma-nipulation, and validation software.

Availability: LibSBML 3 was released in August 2007. Source code, binaries and documentation are freely available under LGPL open-source terms from http://sbml.org/software/libsbml.

Contact: sbml-team{at}caltech.edu

Associate Editor: Dr. Olga Troyanskaya

+Authors share equal recognition for development of libSBML.

Received on January 13, 2008; revised on January 13, 2008; accepted on January 31, 2008

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