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Bioinformatics Advance Access published online on April 1, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn115
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© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

M. Vassura 1,*, L. Margara 1, P. Di Lena 1, F. Medri 1, P. Fariselli 2 and R. Casadio 2

1Department of Computer Science and 2Biocomputing group, Department of Biology, University of Bologna, Italy.

*To whom correspondence should be addressed. Dr. Marco Vassura, E-mail: vassura{at}cs.unibo.it


  Abstract

Summary: FT-COMAR (Fault Tolerant Contact Map Reconstruction) is a heuristic algorithm for the reconstruction of the protein three-dimensional structure from (possibly) incomplete (i.e. containing unknown entries) and noisy contact maps. FT-COMAR runs within minutes, allowing its application to a large-scale number of predictions.

Availability: http://bioinformatics.cs.unibo.it/FT-COMAR

Contact: vassura{at}cs.unibo.it

Associate Editor: Prof. Alfonso Valencia

Received on January 3, 2008; revised on March 17, 2008; accepted on March 28, 2008

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