Skip Navigation



Bioinformatics Advance Access published online on April 14, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn136
This Article
Right arrow Advance Access manuscript (PDF)
Right arrow Supplementary Data
Right arrow All Versions of this Article:
24/11/1406    most recent
btn136v1
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Guillot, G.
Right arrow Articles by Estoup, A.
PubMed
Right arrow PubMed Citation
Right arrow Articles by Guillot, G.
Right arrow Articles by Estoup, A.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Analysing georeferenced population genetics data with Geneland: a new algorithm to deal with null alleles and a friendly graphical user interface.

Gilles Guillot 1,*, Filipe Santos 2 and Arnaud Estoup 2

1Centre for Ecological and Evolutionary Synthesis Department of Biology, University of Oslo, P.O Box 1066 Blindern, 0316 Oslo Norway. Also INRA Applied Math. Dept., Paris, France.
2Centre de Biologie et de Gestion des Populations, INRA / IRD / CIRAD / Montpellier SupAgro, Campus international de Baillarguet, CS 30016, F-34988 Montferrier-sur-Lez cedex, France.

*To whom correspondence should be addressed. Dr. Gilles Guillot, E-mail: gilles.guillot{at}bio.uio.no


  Abstract

Motivation: We introduce a new algorithm to account for the presence of null alleles in inferences of populations clusters from individual multilocus genetic data. We show by simulations that the presence of null alleles can affect the accuracy of inferences if not properly accounted for and that our algorithm improve signficantly their accuracy.

Availability: This new algorithm is implemented in the program Geneland. It is freely available under GNU public license as an R package on the Comprehensive R Archive Network. It now includes a fully clickable graphical interface. Informations on how to get the software are available on folk.uio.no/gillesg/Geneland.html

Supplementary material: Details on the simulation study are available from folk.uio.no/gillesg/BioInformatics_Geneland

Contact: gilles.guillot{at}bio.uio.no

Associate Editor: Prof. Martin Bishop

Received on March 27, 2008; revised on April 9, 2008; accepted on April 9, 2008

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?




Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.