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Bioinformatics Advance Access published online on July 4, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn344
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© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

TRITON: a graphical tool for ligand-binding protein engineering

Martin Prokop 1,*, Jan Adam 1, Zdenek Kríz 1, Michaela Wimmerová 1,2 and Jaroslav Koca 1

1National Centre for Biomolecular Research and 2Department of Biochemistry, Faculty of Science, Masaryk University, Kotlárská 2, 611 37 Brno, Czech Republic

*To whom correspondence should be addressed. Dr. Martin Prokop, E-mail: martinp{at}chemi.muni.cz


  Abstract

Summary: The new version of the TRITON program provides user-friendly graphical tools for modeling protein mutants using the external program MODELLER and for docking ligands into the mutants using the external program AutoDock. TRITON can now be used to design ligand binding proteins, to study protein-ligand binding mechanisms or simply to dock any ligand to a protein.

Availability: Executable files of TRITON are available free of charge for academic users at http://ncbr.chemi.muni.cz/triton/

Contact: triton{at}chemi.muni.cz

Supplementary information: Supplementary data are available at Bioinformatics online

Associate Editor: Prof. Dmitrij Frishman

Received on April 2, 2008; revised on July 2, 2008; accepted on July 3, 2008

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