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Bioinformatics Advance Access published online on August 11, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn417
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© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Arabidopsis thaliana Regulatory Element Analyzer (AtREA)

Ananyo Choudhury * and Ansuman Lahiri

Department of Biophysics Molecular Biology and Genetics, University of Calcutta, 92 APC Road, Kolkata 700009, India

*To whom correspondence should be addressed. Dr. Ananyo Choudhury, E-mail: ananyo.c{at}gmail.com


  Abstract

Summary: In the AtREA (Arabidopsis thaliana Regulatory Element Analyzer) server we have integrated sequence data, genome-wide expression data and functional annotation data in three application modules which will be useful to identify major regulatory targets of a user provided CRE (cis-regulatory element), study different features of CRE distribution and evaluate the role of a set of CREs in the regulation of gene expression - independently as well as in combination with other user provided CREs.

Availability: AtREA is freely available at http://www.bioinformatics.org/grn/atrea.html.

Contact: ananyo.c{at}gmail.com

Associate Editor: Prof. David Rocke

Received on March 8, 2008; revised on August 5, 2008; accepted on August 6, 2008

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