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Bioinformatics Advance Access published online on August 30, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn468
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© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

SynBioSS: The Synthetic Biology Modeling Suite

Anthony D. Hill 1,2, Jonathan R. Tomshine 1,2, Emma M. B. Weeding 1,2, Vassilios Sotiropoulos 1,2 and Yiannis N. Kaznessis 1,2,*

1Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Ave. SE, Minneapo-lis, MN 55455-0132, USA.
2Digital Technology Center, University of Minnesota, 117 Pleasant Ave. SE, Minneapolis, MN 55455, USA.

*To whom correspondence should be addressed. Prof. Yiannis N. Kaznessis, E-mail: yiannis{at}cems.umn.edu


  Abstract

Summary: SynBioSS is a suite of software for the modeling and simulation of synthetic genetic constructs. SynBioSS utilizes the registry of standard biological parts, a database of kinetic parameters, and both graphical and command-line interfaces to multiscale simulation algo-rithms.

Availability: SynBioSS is available under the GNU General Public License at http://synbioss.sourceforge.net.

Contact: yiannis{at}cems.umn.edu

Supplementary Information: Tutorials and documentation are available at the SynBioSS web site: http://synbioss.sourceforge.net.

Associate Editor: Prof. Martin Bishop

Received on July 11, 2008; revised on August 20, 2008; accepted on August 27, 2008

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