Skip Navigation



Bioinformatics Advance Access published online on October 7, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn517
This Article
Right arrow Advance Access manuscript (PDF) Freely available
Right arrow Supplementary Data
Right arrow All Versions of this Article:
24/23/2773    most recent
btn517v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Chen, P.-A.
Right arrow Articles by Chao, K.-M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Chen, P.-A.
Right arrow Articles by Chao, K.-M.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

CNVDetector: locating copy number variations using array CGH data

Peng-An Chen 1, Hsiao-Fei Liu 1 and Kun-Mao Chao 1,2,3,*

1Department of Computer Science and Information Engineering, 2Graduate Institute of Biomedical Electronics and Bioinformatics and 3Graduate Institute of Networking and Multimedia, National Taiwan University, Taipei, Taiwan

*To whom correspondence should be addressed. Prof. Kun-Mao Chao, E-mail: kmchao{at}csie.ntu.edu.tw


  Abstract

Summary: CNVDetector is a program for locating copy number variations in a single genome. CNVDetector has several merits: (1) it can deal with the array CGH data even if the noise is not normally distributed; (2) it has a linear time kernel; (3) its parameters can be easily selected; (4) it evaluates the statistical significance for each CNV calling.

Availability: CNVDetector (for Windows platform) can be downloaded from http://www.csie.ntu.edu.tw/~kmchao/tools/CNVDetector/.

Contact: kmchao{at}csie.ntu.edu.tw

Associate Editor: Dr. Alex Bateman

Received on March 12, 2008; revised on September 4, 2008; accepted on October 4, 2008

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
F.-C. Chen, Y.-Z. Chen, and T.-J. Chuang
CNVVdb: a database of copy number variations across vertebrate genomes
Bioinformatics, June 1, 2009; 25(11): 1419 - 1421.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.