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Bioinformatics Advance Access published online on October 25, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn556
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© 2008 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

AUGIST: Inferring species trees while accommodating gene tree uncertainty

Jeffrey C. Oliver 1,2,*

1Interdisciplinary Program in Insect Science, University of Arizona, Tucson, AZ 85721 and 2Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut 06511

*To whom correspondence should be addressed. Dr. Jeffrey C. Oliver, E-mail: jeffrey.oliver{at}yale.edu


  Abstract

Summary: AUGIST is a new software package for inferring species trees while accommodating uncertainty in gene genealogies. It is written for the Mesquite software system and provides sampling procedures to incorporate uncertainty in gene tree reconstruction while providing confidence estimates for inferred species trees.

Availability: http://www.lycaenid.org/augist/

Contact: jeffrey.oliver{at}yale.edu

Associate Editor: Prof. Martin Bishop

Received on September 3, 2008; revised on October 23, 2008; accepted on October 23, 2008

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