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Bioinformatics Advance Access published online on November 12, 2008
Bioinformatics, doi:10.1093/bioinformatics/btn588
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© The Author (2008). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context

Rutger W.W. Brouwer 1,*, Sacha A.F.T. van Hijum 1,2,3,*,{dagger} and Oscar P. Kuipers 1,{dagger}

1Department of Molecular Genetics Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, 9751 NN, Haren, The Netherlands.
2Interfacultary Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University, Friedrich-Ludwig-Jahn Straße 15A, 17487, Greifswald, Germany.

{dagger}To whom correspondence should be addressed. Dr. Sacha A.F.T. van Hijum, E-mail: sacha.vanhijum{at}nizo.nl, Oscar P. Kuipers, E-mail: o.p.kuipers{at}rug.nl


  Abstract

Summary: We have developed MINOMICS, a tool that allows facile and in-depth visualization of prokaryotic transcriptomic and proteomic data in conjunction with genomics data. MINOMICS generates interactive linear genome maps in which multiple experimental datasets are displayed together with operon, regulatory motif, transcriptional promoter, and transcriptional terminator information.

Availability: MINOMICS is freely accessible at http://www.minomics.nl

Contact: o.p.kuipers{at}rug.nl or sacha.vanhijum{at}nizo.nl

Supplementary information: http://bioinformatics.biol.rug.nl/supplementary/minomics/

Associate Editor: Prof. Alfonso Valencia

* both authors contributed equally

3Current address: NIZO food research, P.O. Box 20, 6710 BA, Ede, The Netherlands.

Received on August 15, 2008; revised on November 7, 2008; accepted on November 10, 2008

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