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Bioinformatics Advance Access published online on January 15, 2009
Bioinformatics, doi:10.1093/bioinformatics/btp025
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© The Author (2009). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions

Emilie Chautard 1, Lionel Ballut 1, Nicolas Thierry-Mieg 2,* and Sylvie Ricard-Blum 1,*

1UMR 5086 CNRS - Université Lyon 1, 7 passage du Vercors, 69367 Lyon Cedex 07, France
2 TIMC-IMAG, UMR 5525 CNRS - Université Grenoble 1, Faculté de Médecine, 38706 La Tronche Cedex, France

*To whom correspondence should be addressed. Prof. Sylvie Ricard-Blum, E-mail: s.ricard-blum{at}ibcp.fr


  Abstract

Summary: MatrixDB (http://matrixdb.ibcp.fr) is a database reporting mammalian protein-protein and protein-carbohydrate interactions involving extracellular molecules. It takes into account the full interaction repertoire of the extracellular matrix involving full-length molecules, fragments and multimers. The current version of MatrixDB contains 1972 interactions corresponding to 4412 experiments and involving 259 extracellular biomolecules.

Availability: MatrixDB is freely available at http://matrixdb.ibcp.fr

Contact: nicolas.thierry-mieg{at}imag.fr; s.ricard-blum{at}ibcp.fr

Supplementary data are available at Bioinformatics online.

Associate Editor: Prof. Burkhard Rost

Received on October 23, 2008; accepted on January 8, 2009

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