Skip Navigation


Bioinformatics Advance Access first published online on February 2, 2009
This version published online on February 12, 2009
Bioinformatics, doi:10.1093/bioinformatics/btp061
This Article
Right arrow Advance Access manuscript (PDF)
Right arrow All Versions of this Article:
25/6/834    most recent
btp061v2
btp061v1
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Reyes-Palomares, A.
Right arrow Articles by Sánchez-Jiménez, F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Reyes-Palomares, A.
Right arrow Articles by Sánchez-Jiménez, F.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© The Author (2009). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

Systems Biology Metabolic Modeling Assistant (SBMM): An on-tology-based tool for the integration of metabolic data in kinetic modeling

Armando Reyes-Palomares 1a, Raul Montañez 1a, Alejando del Real-Chicharro 1, Othmane Chniber 2, Amine Kerzazi 2, Ismael Navas-Delgado 2, Miguel Ángel Medina 1, José Aldana. Montes 2 and Francisca Sánchez-Jiménez 1,*

1Department of Molecular Biology and Biochemistry and unit 741 of CIBER "de Enfermedades Raras" , University of Málaga, Campus de Teatinos, University of Malaga, 29071, Spain.
2Department of Computer Languages and Computational Sciences, University of Málaga, Campus de Teatinos, University of Malaga, 29071, Spain.

*To whom correspondence should be addressed. Miss Francisca Sánchez-Jiménez, E-mail: kika{at}uma.es


  Abstract

Summary: We present SBMM Assistant, a tool built using an ontology-based mediator, and designed to facilitate metabolic modeling through the integration of data from repositories that contain valuable metabolic information. This software can be used for the visualization, design and management of metabolic networks; selection, integration and storage of metabolic information; and as an assistant for kinetic modeling.

Availability: SBMM Assistant is freely available for academic use at http://www.sbmm.uma.es.

Contact: kika{at}uma.es

Associate Editor: Dr. Trey Ideker

Received on December 27, 2008; revised on December 27, 2008; accepted on January 24, 2009

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
A. Schluter, A. Real-Chicharro, T. Gabaldon, F. Sanchez-Jimenez, and A. Pujol
PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome
Nucleic Acids Res., November 5, 2009; (2009) gkp935v1.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.