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Bioinformatics Advance Access published online on March 20, 2009
Bioinformatics, doi:10.1093/bioinformatics/btp134
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© 2009 The Author(s)
This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance

Robert J. Gifford 1,*, Tommy F. Liu 1, Soo-Yon Rhee 1, Mark Kiuchi 1, Stephane Hue 2, Deenan Pillay 2,3 and Robert W. Shafer 1

1 Division of Infectious Diseases, Department of Medicine, Stanford University, Stanford, CA, U.S.
2 Department of Infection, University College London, London.
3 Centres for Infection, Health Protection Agency, Colindale, UK.

*To whom correspondence should be addressed. Dr. Robert Gifford, E-mail: robjgiff{at}gmail.com, robjgiff{at}gmail.com


  Abstract

Summary: The calibrated population resistance (CPR) tool is a web-accessible program for performing standardized genotypic estimation of transmitted HIV-1 drug resistance. The program is linked to the Stanford HIV drug resistance database and can additionally perform viral genotyping and algorithmic estimation of resistance to specific antiretroviral drugs.

Availability: http://surveillance.stanford.edu/cpr/index.html

Contact: robjgiff{at}gmail.com

Associate Editor: Dr. Alex Bateman

Received on November 12, 2008; revised on February 27, 2009; accepted on March 4, 2009

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