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Bioinformatics Advance Access published online on April 3, 2009
Bioinformatics, doi:10.1093/bioinformatics/btp187
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© The Author (2009). Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org

DnaSP v5: A software for comprehensive analysis of DNA poly-morphism data

P. Librado 1,2 and J. Rozas 1,2,*

1Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain.
2Institut de Recerca de la Biodiversitat, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain.

*To whom correspondence should be addressed. Dr. Julio Rozas, E-mail: jrozas{at}ub.edu


  Abstract

Motivation: DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large data sets. Among other features, the newly implemented methods allow for: 1) analyses on multiple data files; 2) haplotype phasing; 3) analyses on insertion/deletion polymorphism data; 4) visualizing sliding window results integrated with available genome annotations in the UCSC browser.

Availability: Freely available to academic users from: http://www.ub.edu/dnasp

Contact: jrozas{at}ub.edu

Associate Editor: Prof. Martin Bishop

Received on February 10, 2009; revised on April 2, 2009; accepted on April 2, 2009

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