Bioinformatics

ORIGINAL PAPERS:

Ying Xu, Richard J. Mural, and Edward C. Uberbacher

Correcting sequencing errors in DNA coding regions using a dynamic programming approach
Comput. Appl. Biosci. 1995 11: 117-124; doi:10.1093/bioinformatics/11.2.117 [Abstract] [Print PDF] [Request Permissions]  

Kotoko Nakata

Prediction of zinc finger DNA binding protein
Comput. Appl. Biosci. 1995 11: 125-131; doi:10.1093/bioinformatics/11.2.125 [Abstract] [Print PDF] [Request Permissions]  

Martin Ligr, Cyril Ron, and Lubomir Natr

Calculation of the photo period length
Comput. Appl. Biosci. 1995 11: 133-139; doi:10.1093/bioinformatics/11.2.133 [Abstract] [Print PDF] [Request Permissions]  

A. Perrakis, C. Constantinides, A. Athanasiades, and S.J. Hamodrakas

PBM: a software package to create, display and manipulate interactively models of small molecules and proteins on IBM-compatible PCs
Comput. Appl. Biosci. 1995 11: 141-145; doi:10.1093/bioinformatics/11.2.141 [Abstract] [Print PDF] [Request Permissions]  

Kun-Mao Chao, Jinghui Zhang, James Ostell, and Webb Miller

A local alignment tool for very long DNA sequences
Comput. Appl. Biosci. 1995 11: 147-153; doi:10.1093/bioinformatics/11.2.147 [Abstract] [Print PDF] [Request Permissions]  

Geoffrey D. Smith and Kenneth E. Bernstein

BULLET: a computer simulation of shotgun DNA sequencing
Comput. Appl. Biosci. 1995 11: 155-157; doi:10.1093/bioinformatics/11.2.155 [Abstract] [Print PDF] [Request Permissions]  

Hidemi Watanabe and Jinya Otsuka

A comprehensive representation of extensive similarity linkage between large numbers of proteins
Comput. Appl. Biosci. 1995 11: 159-166; doi:10.1093/bioinformatics/11.2.159 [Abstract] [Print PDF] [Request Permissions]  

Carlo Nesti, Giorgio Poli, Milvia Chicca, Piera Ambrosino, Chiara Scapoli, and Italo Barrai

Phylogeny inferred from codon usage pattern in 31 organisms
Comput. Appl. Biosci. 1995 11: 167-171; doi:10.1093/bioinformatics/11.2.167 [Abstract] [Print PDF] [Request Permissions]  

Eugene Veklerov, Christopher H. Martin, and Edward H. Theil

TRAMP: a software package for generating transposon maps
Comput. Appl. Biosci. 1995 11: 173-179; doi:10.1093/bioinformatics/11.2.173 [Abstract] [Print PDF] [Request Permissions]  

Julie D. Thompson

Introducing variable gap penalties to sequence alignment in linear space
Comput. Appl. Biosci. 1995 11: 181-186; doi:10.1093/bioinformatics/11.2.181 [Abstract] [Print PDF] [Request Permissions]  

Michael L. Metzker, Kyle M. Allain, and Richard A. Gibbs

Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0)
Comput. Appl. Biosci. 1995 11: 187-194; doi:10.1093/bioinformatics/11.2.187 [Abstract] [Print PDF] [Request Permissions]  

Jan Mrázek and Jaroslav Kypr

Middle-range clustering of nucleotides in genomes
Comput. Appl. Biosci. 1995 11: 195-199; doi:10.1093/bioinformatics/11.2.195 [Abstract] [Print PDF] [Request Permissions]  

Magnus Ehlde and Guido Zacchi

MIST: a user-friendly metabolic simulator
Comput. Appl. Biosci. 1995 11: 201-207; doi:10.1093/bioinformatics/11.2.201 [Abstract] [Print PDF] [Request Permissions]  

Juncai Ma, Satoru Miyazaki, and Hideaki Sugawara

A handy database for culture collections worldwide: CCINFO-PC
Comput. Appl. Biosci. 1995 11: 209-212; doi:10.1093/bioinformatics/11.2.209 [Abstract] [Print PDF] [Request Permissions]  

Olga E. Belova, Vitaly A. Likhoshvai, Sergey I. Bazhan, and Vladimir A. Kulichkov

A computer system for analysis and integrated description of regulation of the molecular-genetic system of interferon induction and action
Comput. Appl. Biosci. 1995 11: 213-218; doi:10.1093/bioinformatics/11.2.213 [Abstract] [Print PDF] [Request Permissions]  

R. Doelz and F. Eggenberger

A compression mechanism for sequence databases to improve the efficiency of conventional tools
Comput. Appl. Biosci. 1995 11: 219-223; doi:10.1093/bioinformatics/11.2.219 [Abstract] [Print PDF] [Request Permissions]  

COMMUNICATION:

R. Doelz

Optimal production of biological documentation: the JAM format
Comput. Appl. Biosci. 1995 11: 224-226; doi:10.1093/bioinformatics/11.2.224 [Abstract] [Print PDF] [Request Permissions]  

SOFTWARE REVIEW:

T.N. Bryant and S.A. Julious

CABIOS SOFTWARE REVIEW: Multi-Variate Statistical Package Plus version 2.1
Comput. Appl. Biosci. 1995 11: 227-228; doi:10.1093/bioinformatics/11.2.227 [Print PDF] [Request Permissions]  

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