Bioinformatics

ORIGINAL PAPERS:

Jin Kim, James R. Cole, and Sakti Pramanik

Alignment of possible secondary structures in multiple RNA sequences using simulated annealing
Comput. Appl. Biosci. 1996 12: 259-267; doi:10.1093/bioinformatics/12.4.259 [Abstract] [Print PDF] [Request Permissions]  

Suchendra M. Bhandarkar, Sridhar Chirravuri, and Jonathan Arnold

PARODS—a study of parallel algorithms for ordering DNA sequences
Comput. Appl. Biosci. 1996 12: 269-280; doi:10.1093/bioinformatics/12.4.269 [Abstract] [Print PDF] [Request Permissions]  

Klaus Lindauer, Cezar Bendic, and Jürgen Sühnel

HBexplore—a new tool for identifying and analysing hydrogen bonding patterns in biological macromolecules
Comput. Appl. Biosci. 1996 12: 281-289; doi:10.1093/bioinformatics/12.4.281 [Abstract] [Print PDF] [Request Permissions]  

Ingrid B. Jakobsen and Simon Easteal

A program for calculating and displaying compatibility matrices as an aid in determining reticulate evolution in molecular sequences
Comput. Appl. Biosci. 1996 12: 291-295; doi:10.1093/bioinformatics/12.4.291 [Abstract] [Print PDF] [Request Permissions]  

Igor Kuznetsov and Pavel Morozov

GEOMETRY: a software package for nucleotide sequence analysis using statistical geometry in sequence space
Comput. Appl. Biosci. 1996 12: 297-301; doi:10.1093/bioinformatics/12.4.297 [Abstract] [Print PDF] [Request Permissions]  

William N. Grundy, Timothy L. Bailey, and Charles P. Elkan

ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool
Comput. Appl. Biosci. 1996 12: 303-310; doi:10.1093/bioinformatics/12.4.303 [Abstract] [Print PDF] [Request Permissions]  

Hu Lijuan, Elaine F. Saulinskas, Peter Johnson, and Peter de B. Harrington

Development of an expert system for amino acid sequence identification
Comput. Appl. Biosci. 1996 12: 311-318; doi:10.1093/bioinformatics/12.4.311 [Abstract] [Print PDF] [Request Permissions]  

C.C. Chen, R.O. Chen, and R.B. Altman

Constraining volume by matching the moments of a distance distribution
Comput. Appl. Biosci. 1996 12: 319-326; doi:10.1093/bioinformatics/12.4.319 [Abstract] [Print PDF] [Request Permissions]  

Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I.Saira Mian, and David Haussler

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology
Comput. Appl. Biosci. 1996 12: 327-345; doi:10.1093/bioinformatics/12.4.327 [Abstract] [Print PDF] [Request Permissions]  

COMMUNICATIONS:

J.P. Grillasca, D. Aubert, R. Planells, N. Domingo, and H. Lafont

LITTLE KEVIN: a program for the estimation of protein homology by analysing the amino acid compositions and sequences
Comput. Appl. Biosci. 1996 12: 347-351; doi:10.1093/bioinformatics/12.4.347 [Abstract] [Print PDF] [Request Permissions]  

Miguel Prieto Maradona

Software for microbial fingerprinting by means of the infrared spectra
Comput. Appl. Biosci. 1996 12: 353-356; doi:10.1093/bioinformatics/12.4.353 [Abstract] [Print PDF] [Request Permissions]  

APPLICATIONS NOTE:

Roderic D.M. Page

Tree View: An application to display phylogenetic trees on personal computers
Comput. Appl. Biosci. 1996 12: 357-358; doi:10.1093/bioinformatics/12.4.357 [Print PDF] [Request Permissions]  

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