Bioinformatics

ORIGINAL PAPERS:

Ronna R. Mallios

An iterative algorithm for converting a class II MHC binding motif into a quantitative predictive model
Comput. Appl. Biosci. 1997 13: 211-215; doi:10.1093/bioinformatics/13.3.211 [Abstract] [Print PDF] [Request Permissions]  

Prakash M. Nadkarni

Mapdiff: determining differences between two genomic maps
Comput. Appl. Biosci. 1997 13: 217-225; doi:10.1093/bioinformatics/13.3.217 [Abstract] [Print PDF] [Request Permissions]  

Yves Van de Peer and Rupert De Wachter

Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites
Comput. Appl. Biosci. 1997 13: 227-230; doi:10.1093/bioinformatics/13.3.227 [Abstract] [Print PDF] [Request Permissions]  

Patrick Aloy, Juan Cedano, Baldomero Oliva, Francesc X. Avilés, and Enrique Querol

‘TransMem’: a neural network implemented in Excel spreadsheets for predicting transmembrane domains of proteins
Comput. Appl. Biosci. 1997 13: 231-234; doi:10.1093/bioinformatics/13.3.231 [Abstract] [Print PDF] [Request Permissions]  

Andrew Rambaut and Nicholas C. Grass

Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
Comput. Appl. Biosci. 1997 13: 235-238; doi:10.1093/bioinformatics/13.3.235 [Abstract] [Print PDF] [Request Permissions]  

R. Fuchs

Grouper—creation of marker sets for multiplexed genotyping
Comput. Appl. Biosci. 1997 13: 239-241; doi:10.1093/bioinformatics/13.3.239 [Abstract] [Print PDF] [Request Permissions]  

Anatoly S. Frolo, Irina S. Pik, and Alexey M. Eroshkin

ProMSED: protein multiple sequence editor for Windows 3.11/95
Comput. Appl. Biosci. 1997 13: 243-248; doi:10.1093/bioinformatics/13.3.243 [Abstract] [Print PDF] [Request Permissions]  

Eric Depiereux, Guy Baudoux, Pascal Briffeuil, Isabelle Reginster, Xavier De Bolle, Carla Vinals, and Ernest Feytmans

Match-Box_server: a multiple sequence alignment tool placing emphasis on reliability
Comput. Appl. Biosci. 1997 13: 249-256; doi:10.1093/bioinformatics/13.3.249 [Abstract] [Print PDF] [Request Permissions]  

Josef P{acute}nek and Vohradsky Jirí

Object-oriented developmental environment for image-analysis applications: implementation for 2D gel electrophoretogram analysis
Comput. Appl. Biosci. 1997 13: 257-262; doi:10.1093/bioinformatics/13.3.257 [Abstract] [Print PDF] [Request Permissions]  

Shrish Tiwari, S. Ramachandran, Alok Bhattacharya, Sudha Bhattacharya, and Ramakrishna Ramaswamy

Prediction of probable genes by Fourier analysis of genomic sequences
Comput. Appl. Biosci. 1997 13: 263-270; doi:10.1093/bioinformatics/13.3.263 [Abstract] [Print PDF] [Request Permissions]  

L. Ehrlich, C. Mükel, G. Chirico, and J. Langowski

A Brownian dynamics model for the chromatin fiber
Comput. Appl. Biosci. 1997 13: 271-279; doi:10.1093/bioinformatics/13.3.271 [Abstract] [Print PDF] [Request Permissions]  

Scott Panzer, Lynn Cooley, and Perry L. Miller

Using explicitly represented biological relationships for database navigation and searching via the World-Wide Web
Comput. Appl. Biosci. 1997 13: 281-290; doi:10.1093/bioinformatics/13.3.281 [Abstract] [Print PDF] [Request Permissions]  

G. Labesse, N. Colloc'h, J. Pothier, and J.-P. Mornon

P-SEA: a new efficient assignment of secondary structure from C trace of proteins
Comput. Appl. Biosci. 1997 13: 291-295; doi:10.1093/bioinformatics/13.3.291 [Abstract] [Print PDF] [Request Permissions]  

András Fiser, Zsuzsanna Dosztányi, and István Simon

The role of long-range interactions in defining the secondary structure of proteins is overestimated
Comput. Appl. Biosci. 1997 13: 297-301; doi:10.1093/bioinformatics/13.3.297 [Abstract] [Print PDF] [Request Permissions]  

Andrew Rambaut, Paul H. Harvey, and Sean Nee

End-Epi: An application for inferring phylogenetic and population dynamical processes from molecular sequences
Comput. Appl. Biosci. 1997 13: 303-306; doi:10.1093/bioinformatics/13.3.303 [Abstract] [Print PDF] [Request Permissions]  

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