Bioinformatics

INVITED REVIEWS:

William R. Pearson

Identifying distantly related protein sequences
Comput. Appl. Biosci. 1997 13: 325-332; doi:10.1093/bioinformatics/13.4.325 [Print PDF] [Request Permissions]  

David B. Searls

Linguistic approaches to biological sequences
Comput. Appl. Biosci. 1997 13: 333-344; doi:10.1093/bioinformatics/13.4.333 [Abstract] [Print PDF] [Request Permissions]  

Burkhard Rost and Sean O'Donoghue

Sisyphus and prediction of protein structure
Comput. Appl. Biosci. 1997 13: 345-356; doi:10.1093/bioinformatics/13.4.345 [Abstract] [Print PDF] [Request Permissions]  

ORIGINAL PAPERS:

Tatsuya Akutsu, Kentaro Onizuka, and Masato shikawa

Rapid protein fragment search using hash functions based on the Fourier transform
Comput. Appl. Biosci. 1997 13: 357-364; doi:10.1093/bioinformatics/13.4.357 [Abstract] [Print PDF] [Request Permissions]  

Steven L. Salzberg

A method for identifying splice sites and translational start sites in eukaryotic mRNA
Comput. Appl. Biosci. 1997 13: 365-376; doi:10.1093/bioinformatics/13.4.365 [Abstract] [Print PDF] [Request Permissions]  

Jan-Hendrik S. Hofmeyr and Hofmeyr Cornish-Bowden

The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models
Comput. Appl. Biosci. 1997 13: 377-385; doi:10.1093/bioinformatics/13.4.377 [Abstract] [Print PDF] [Request Permissions]  

Hiroyuki Toh

Introduction of a distance cut-off into structural alignment by the double dynamic programming algorithm
Comput. Appl. Biosci. 1997 13: 387-396; doi:10.1093/bioinformatics/13.4.387 [Abstract] [Print PDF] [Request Permissions]  

William N. Grundy, Timothy L. Bailey, Charles P. Elkan, and Michael E. Baker

meta-MEME: Motif-based hidden Markov models of protein families
Comput. Appl. Biosci. 1997 13: 397-406; doi:10.1093/bioinformatics/13.4.397 [Abstract] [Print PDF] [Request Permissions]  

P. Durand, L. Canard, and J.P. Mornon

Visual BLAST and Visual FASTA: graphic workbenches for interactive analysis of full BLAST and FASTA outputs under Microsoft Windows 95/NT
Comput. Appl. Biosci. 1997 13: 407-413; doi:10.1093/bioinformatics/13.4.407 [Abstract] [Print PDF] [Request Permissions]  

Masahiro Ito, Yo Matsuo, and ken Nishikawa

Prediction of protein secondary structure using the 30D- 1D compatibility algorithm
Comput. Appl. Biosci. 1997 13: 415-424; doi:10.1093/bioinformatics/13.4.415 [Abstract] [Print PDF] [Request Permissions]  

Rob W.W. Hooft, Chris Sander, and Gerrit Vriend

Objectively judging the quality of a protein structure from a Ramachandran plot
Comput. Appl. Biosci. 1997 13: 425-430; doi:10.1093/bioinformatics/13.4.425 [Abstract] [Print PDF] [Request Permissions]  

Véronique Biaudet, Franck Samson, and Philippe Bessières

Micado—a network-oriented database for microbial genomes
Comput. Appl. Biosci. 1997 13: 431-438; doi:10.1093/bioinformatics/13.4.431 [Abstract] [Print PDF] [Request Permissions]  

Steven Lay and Dennis Bray

A computer program for the analysis of protein complex formation
Comput. Appl. Biosci. 1997 13: 439-444; doi:10.1093/bioinformatics/13.4.439 [Abstract] [Print PDF] [Request Permissions]  

Johannes Schäfer and Michael Schöniger

DISTREE: A tool for estimating genetic distances between aligned DNA sequences
Comput. Appl. Biosci. 1997 13: 445-451; doi:10.1093/bioinformatics/13.4.445 [Abstract] [Print PDF] [Request Permissions]  

Robert W. Gill, T.Charles Hodgman, Chris B. Littler, Marcus D. Oxer, Douglas S. Montgomery, Steve Taylor, and Philippe Sanseau

A new dynamic tool to perform assembly of Expressed Sequence Tags (ESTs)
Comput. Appl. Biosci. 1997 13: 453-457; doi:10.1093/bioinformatics/13.4.453 [Abstract] [Print PDF] [Request Permissions]  

Bruce A. Shapiro and Jin Chu Wu

Predicting RNA H-type pseudoknots with the massively parallel genetic algorithm
Comput. Appl. Biosci. 1997 13: 459-471; doi:10.1093/bioinformatics/13.4.459 [Abstract] [Print PDF] [Request Permissions]  

APPLICATIONS NOTES:

Ross D. King, Mansoor Saqi, Roger Sayle, and Michael J.E. Sternberg

DSC: public domain protein secondary structure prediction
Comput. Appl. Biosci. 1997 13: 473-474; doi:10.1093/bioinformatics/13.4.473 [Print PDF] [Request Permissions]  

LI.G. Toldo

JaMBW 1.1: Java-based Molecular Biologists' Workbench
Comput. Appl. Biosci. 1997 13: 475-476; doi:10.1093/bioinformatics/13.4.475 [Print PDF] [Request Permissions]  

Richard Mott

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA
Comput. Appl. Biosci. 1997 13: 477-478; doi:10.1093/bioinformatics/13.4.477 [Print PDF] [Request Permissions]  

Jeffrey S. Amthor

Calculation of daylength
Comput. Appl. Biosci. 1997 13: 479-480; doi:10.1093/bioinformatics/13.4.479 [Print PDF] [Request Permissions]  

Miguel Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, and Christos Ouzounis

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function
Comput. Appl. Biosci. 1997 13: 481-483; doi:10.1093/bioinformatics/13.4.481 [Print PDF] [Request Permissions]  

E. Lorenz, S. Leeton, and R.J. Owen

A simple method for sizing large fragments of bacterial DNA separated by PFGE
Comput. Appl. Biosci. 1997 13: 485-486; doi:10.1093/bioinformatics/13.4.485 [Print PDF] [Request Permissions]  

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