Bioinformatics

OVERALL:

Special issue containing a selection of papers presented at the 1st International Conference on Bioinformatics of Genome Regulation and Structure. BGRS '98. Novosibirsk, Altai Mountains, Russia. 24-31 August 1998
Bioinformatics 1999 15: 527-714; doi:10.1093/bioinformatics/15.7.527 [Print PDF] [Request Permissions]  

ARTICLES:

F Eisenhaber and P Bork

Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries
Bioinformatics 1999 15: 528-535; doi:10.1093/bioinformatics/15.7.528 [Abstract] [Print PDF] [Request Permissions]  

TA Tatusova, I Karsch-Mizrachi, and JA Ostell

Complete genomes in WWW Entrez: data representation and analysis
Bioinformatics 1999 15: 536-543; doi:10.1093/bioinformatics/15.7.536 [Abstract] [Print PDF] [Request Permissions]  

K Nakata, T Takai, and T Kaminuma

Development of the receptor database (RDB): application to the endocrine disruptor problem
Bioinformatics 1999 15: 544-552; doi:10.1093/bioinformatics/15.7.544 [Abstract] [Print PDF] [Request Permissions]  

VB Berikov and IB Rogozin

Regression trees for analysis of mutational spectra in nucleotide sequences
Bioinformatics 1999 15: 553-562; doi:10.1093/bioinformatics/15.7.553 [Abstract] [Print PDF] [Request Permissions]  

GZ Hertz and GD Stormo

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
Bioinformatics 1999 15: 563-577; doi:10.1093/bioinformatics/15.7.563 [Abstract] [Print PDF] [Request Permissions]  

Y Osada, R Saito, and M Tomita

Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes
Bioinformatics 1999 15: 578-581; doi:10.1093/bioinformatics/15.7.578 [Abstract] [Print PDF] [Request Permissions]  

VG Levitsky, MP Ponomarenko, JV Ponomarenko, AS Frolov, and NA Kolchanov

Nucleosomal DNA property database
Bioinformatics 1999 15: 582-592; doi:10.1093/bioinformatics/15.7.582 [Abstract] [Print PDF] [Request Permissions]  

L Mendoza, D Thieffry, and ER Alvarez-Buylla

Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis
Bioinformatics 1999 15: 593-606; doi:10.1093/bioinformatics/15.7.593 [Abstract] [Print PDF] [Request Permissions]  

J Zhu and MQ Zhang

SCPD: a promoter database of the yeast Saccharomyces cerevisiae
Bioinformatics 1999 15: 607-611; doi:10.1093/bioinformatics/15.7.607 [Abstract] [Print PDF] [Request Permissions]  

L Milanesi, D D'Angelo, and IB Rogozin

GeneBuilder: interactive in silico prediction of gene structure
Bioinformatics 1999 15: 612-621; doi:10.1093/bioinformatics/15.7.612 [Abstract] [Print PDF] [Request Permissions]  

T Tsunoda and T Takagi

Estimating transcription factor bindability on DNA
Bioinformatics 1999 15: 622-630; doi:10.1093/bioinformatics/15.7.622 [Abstract] [Print PDF] [Request Permissions]  

MP Ponomarenko, JV Ponomarenko, AS Frolov, OA Podkolodnaya, DG Vorobyev, NA Kolchanov, and GC Overton

Oligonucleotide frequency matrices addressed to recognizing functional DNA sites
Bioinformatics 1999 15: 631-643; doi:10.1093/bioinformatics/15.7.631 [Abstract] [Print PDF] [Request Permissions]  

VN Babenko, PS Kosarev, OV Vishnevsky, VG Levitsky, VV Basin, and AS Frolov

Investigating extended regulatory regions of genomic DNA sequences
Bioinformatics 1999 15: 644-653; doi:10.1093/bioinformatics/15.7.644 [Abstract] [Print PDF] [Request Permissions]  

JV Ponomarenko, MP Ponomarenko, AS Frolov, DG Vorobyev, GC Overton, and NA Kolchanov

Conformational and physicochemical DNA features specific for transcription factor binding sites
Bioinformatics 1999 15: 654-668; doi:10.1093/bioinformatics/15.7.654 [Abstract] [Print PDF] [Request Permissions]  

NA Kolchanov, MP Ponomarenko, AS Frolov, EA Ananko, FA Kolpakov, EV Ignatieva, OA Podkolodnaya, TN Goryachkovskaya, IL Stepanenko, TI Merkulova, VV Babenko, YV Ponomarenko, AV Kochetov, NL Podkolodny, DV Vorobiev, SV Lavryushev, DA Grigorovich, YV Kondrakhin, L Milanesi, E Wingender, V Solovyev, and GC Overton

Integrated databases and computer systems for studying eukaryotic gene expression
Bioinformatics 1999 15: 669-686; doi:10.1093/bioinformatics/15.7.669 [Abstract] [Print PDF] [Request Permissions]  

MP Ponomarenko, JV Ponomarenko, AS Frolov, NL Podkolodny, LK Savinkova, NA Kolchanov, and GC Overton

Identification of sequence-dependent DNA features correlating to activity of DNA sites interacting with proteins
Bioinformatics 1999 15: 687-703; doi:10.1093/bioinformatics/15.7.687 [Abstract] [Print PDF] [Request Permissions]  

AV Kochetov, MP Ponomarenko, AS Frolov, LL Kisselev, and NA Kolchanov

Prediction of eukaryotic mRNA translational properties
Bioinformatics 1999 15: 704-712; doi:10.1093/bioinformatics/15.7.704 [Abstract] [Print PDF] [Request Permissions]  

FA Kolpakov and EA Ananko

Interactive data input into the GeneNet database
Bioinformatics 1999 15: 713-714; doi:10.1093/bioinformatics/15.7.713 [Abstract] [Print PDF] [Request Permissions]  

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