Bioinformatics

ORIGINAL PAPERS:

Michael Z. Man, Xuning Wang, and Yixin Wang

POWER_SAGE: comparing statistical tests for SAGE experiments
Bioinformatics 2000 16: 953-959; doi:10.1093/bioinformatics/16.11.953 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Tetsuo Nishikawa, Toshio Ota, and Takao Isogai

Prediction whether a human cDNA sequence contains initiation codon by combining statistical information and similarity with protein sequences
Bioinformatics 2000 16: 960-967; doi:10.1093/bioinformatics/16.11.960 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ana T. Vasconcelos, Marco A. Grivet Mattoso Maia, and Darcy F. de Almeida

Short interrupted palindromes on the extragenic DNA of Escherichia coli K-12, Haemophilus influenzae and Neisseria meningitidis
Bioinformatics 2000 16: 968-977; doi:10.1093/bioinformatics/16.11.968 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jong Park, Sabine Dietmann, Andreas Heger, and Liisa Holm

Estimating the significance of sequence order in protein secondary structure and prediction
Bioinformatics 2000 16: 978-987; doi:10.1093/bioinformatics/16.11.978 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Anders Wallqvist, Yoshifumi Fukunishi, Lynne Reed Murphy, Addi Fadel, and Ronald M. Levy

Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases
Bioinformatics 2000 16: 988-1002; doi:10.1093/bioinformatics/16.11.988 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Derek A. Ruths, Edward S. Chen, and Leland Ellis

Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions
Bioinformatics 2000 16: 1003-1009; doi:10.1093/bioinformatics/16.11.1003 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Simon Blomberg

Fels-Rand: an Xlisp-Stat program for the comparative analysis of data under phylogenetic uncertainty
Bioinformatics 2000 16: 1010-1013; doi:10.1093/bioinformatics/16.11.1010 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

COMPUTING WITH GENETIC NETWORKS:

T. Beißbarth, K. Fellenberg, B. Brors, R. Arribas-Prat, J. M. Boer, N. C. Hauser, M. Scheideler, J. D. Hoheisel, G. Schütz, A. Poustka, and M. Vingron

Processing and quality control of DNA array hybridization data
Bioinformatics 2000 16: 1014-1022; doi:10.1093/bioinformatics/16.11.1014 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eberhard O. Voit and Tomas Radivoyevitch

Biochemical systems analysis of genome-wide expression data
Bioinformatics 2000 16: 1023-1037; doi:10.1093/bioinformatics/16.11.1023 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Christopher M.L.S. Bouton and Jonathan Pevsner

DRAGON: Database Referencing of Array Genes Online
Bioinformatics 2000 16: 1038-1039; doi:10.1093/bioinformatics/16.11.1038 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Joseph A. Bedell, Ian Korf, and Warren Gish

MaskerAid : a performance enhancement to RepeatMasker
Bioinformatics 2000 16: 1040-1041; doi:10.1093/bioinformatics/16.11.1040 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Roderic D.M. Page

Circles: automating the comparative analysis of RNA secondary structure
Bioinformatics 2000 16: 1042-1043; doi:10.1093/bioinformatics/16.11.1042 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kristian Vlahovicek and Sándor Pongor

model.it : building three dimensional DNA models from sequence data
Bioinformatics 2000 16: 1044-1045; doi:10.1093/bioinformatics/16.11.1044 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior S. Pachter, and Inna Dubchak

VISTA : visualizing global DNA sequence alignments of arbitrary length
Bioinformatics 2000 16: 1046-1047; doi:10.1093/bioinformatics/16.11.1046 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Paul Kersey, Henning Hermjakob, and Rolf Apweiler

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL
Bioinformatics 2000 16: 1048-1049; doi:10.1093/bioinformatics/16.11.1048 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eric Beitz

T_EXtopo: shaded membrane protein topology plots in LAT_EX2
Bioinformatics 2000 16: 1050-1051; doi:10.1093/bioinformatics/16.11.1050 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ian Korf and Warren Gish

MPBLAST : improved BLAST performance with multiplexed queries
Bioinformatics 2000 16: 1052-1053; doi:10.1093/bioinformatics/16.11.1052 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Matthew Boone and Chris Upton

BLAST Search Updater: a notification system for new database matches
Bioinformatics 2000 16: 1054-1055; doi:10.1093/bioinformatics/16.11.1054 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jeong-Hyeon Choi, Ho-Youl Jung, Hye-Sun Kim, and Hwan-Gue Cho

PhyloDraw: a phylogenetic tree drawing system
Bioinformatics 2000 16: 1056-1058; doi:10.1093/bioinformatics/16.11.1056 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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