Bioinformatics

EDITORIAL:

C. Victor Jongeneel

The need for a human gene index
Bioinformatics 2000 16: 1059-1061; doi:10.1093/bioinformatics/16.12.1059 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Wooyoung Choe, Okan K. Ersoy, and Minou Bina

Neural network schemes for detecting rare events in human genomic DNA
Bioinformatics 2000 16: 1062-1072; doi:10.1093/bioinformatics/16.12.1062 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Dimitris Anastassiou

Frequency-domain analysis of biomolecular sequences
Bioinformatics 2000 16: 1073-1081; doi:10.1093/bioinformatics/16.12.1073 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Raymond Wheeler and Richard Hughey

Optimizing reduced-space sequence analysis
Bioinformatics 2000 16: 1082-1090; doi:10.1093/bioinformatics/16.12.1082 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ying Xu, Dong Xu, and Harold N. Gabow

Protein domain decomposition using a graph-theoretic approach
Bioinformatics 2000 16: 1091-1104; doi:10.1093/bioinformatics/16.12.1091 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Weizhong Li, Frederic Pio, Krzysztof Pawlowski, and Adam Godzik

Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology
Bioinformatics 2000 16: 1105-1110; doi:10.1093/bioinformatics/16.12.1105 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kenji Mizuguchi and Tom L. Blundell

Analysis of conservation and substitutions of secondary structure elements within protein superfamilies
Bioinformatics 2000 16: 1111-1119; doi:10.1093/bioinformatics/16.12.1111 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ONTOLOGY:

Andrey Rzhetsky, Tomohiro Koike, Sergey Kalachikov, Shawn M. Gomez, Michael Krauthammer, Sabina H. Kaplan, Pauline Kra, James J. Russo, and Carol Friedman

A knowledge model for analysis and simulation of regulatory networks
Bioinformatics 2000 16: 1120-1128; doi:10.1093/bioinformatics/16.12.1120 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Toni Kazic

Semiotes: a semantics for sharing
Bioinformatics 2000 16: 1129-1144; doi:10.1093/bioinformatics/16.12.1129 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

DATABASE DEVELOPMENT:

R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, E. Birney, M. Biswas, P. Bucher, L. Cerutti, F. Corpet, M. D. R. Croning, R. Durbin, L. Falquet, W. Fleischmann, J. Gouzy, H. Hermjakob, N. Hulo, I. Jonassen, D. Kahn, A. Kanapin, Y. Karavidopoulou, R. Lopez, B. Marx, N. J. Mulder, T. M. Oinn, M. Pagni, F. Servant, C. J. A. Sigrist, and E. M. Zdobnov

InterPro—an integrated documentation resource for protein families, domains and functional sites
Bioinformatics 2000 16: 1145-1150; doi:10.1093/bioinformatics/16.12.1145 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Meena K. Sakharkar, Pandjassarame Kangueane, Tong W. Woon, Tin W. Tan, Prasanna R. Kolatkar, Manyuan Long, and Sandro J de Souza

IE-Kb: intron exon knowledge base
Bioinformatics 2000 16: 1151-1152; doi:10.1093/bioinformatics/16.12.1151 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Xavier Serra-Hartmann, Xavier Rebordosa, Jaume Piñol, Enrique Querol, and Marc A. Martí-Renom

ASAP: analysis of peptide composition
Bioinformatics 2000 16: 1153-1154; doi:10.1093/bioinformatics/16.12.1153 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

János Murvai, Kristian Vlahovicek, and Sándor Pongor

A simple probabilistic scoring method for protein domain identification
Bioinformatics 2000 16: 1155-1156; doi:10.1093/bioinformatics/16.12.1155 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kevin A. T. Silverstein, Alan Kilian, John L. Freeman, James E. Johnson, Ihab A. Awad, and Ernest F. Retzel

PANAL: an integrated resource for Protein sequence ANALysis
Bioinformatics 2000 16: 1157-1158; doi:10.1093/bioinformatics/16.12.1157 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Steffen Möller, Evgenia V. Kriventseva, and Rolf Apweiler

A collection of well characterised integral membrane proteins
Bioinformatics 2000 16: 1159-1160; doi:10.1093/bioinformatics/16.12.1159 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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