Bioinformatics

Christos Ouzounis

Two or three myths about bioinformatics
Bioinformatics 2000 16: 187-189; doi:10.1093/bioinformatics/16.3.187 [Print PDF][Screen PDF] [Request Permissions]  

Osamu Gotoh

Homology-based gene structure prediction: simplified matching algorithm using a translated codon (tron) and improved accuracy by allowing for long gaps
Bioinformatics 2000 16: 190-202; doi:10.1093/bioinformatics/16.3.190 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jonathan Usuka, Wei Zhu, and Volker Brendel

Optimal spliced alignment of homologous cDNA to a genomic DNA template
Bioinformatics 2000 16: 203-211; doi:10.1093/bioinformatics/16.3.203 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Dorothy M. Lang

Net Nearest Neighbor Analysis (NNNA) summarizes non-compensated dinucleotides within gene sequences
Bioinformatics 2000 16: 212-221; doi:10.1093/bioinformatics/16.3.212 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yuh-Jyh Hu, Suzanne Sandmeyer, Calvin McLaughlin, and Dennis Kibler

Combinatorial motif analysis and hypothesis generation on a genomic scale
Bioinformatics 2000 16: 222-232; doi:10.1093/bioinformatics/16.3.222 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Thomas D. Wu, Craig G. Nevill-Manning, and Douglas L. Brutlag

Fast probabilistic analysis of sequence function using scoring matrices
Bioinformatics 2000 16: 233-244; doi:10.1093/bioinformatics/16.3.233 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

B. Jagla and J. Schuchhardt

Adaptive encoding neural networks for the recognition of human signal peptide cleavage sites
Bioinformatics 2000 16: 245-250; doi:10.1093/bioinformatics/16.3.245 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

András Fiser and István Simon

Predicting the oxidation state of cysteines by multiple sequence alignment
Bioinformatics 2000 16: 251-256; doi:10.1093/bioinformatics/16.3.251 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Dong Xu, Michael A. Unseren, Ying Xu, and Edward C. Uberbacher

Sequence-structure specificity of a knowledge based energy function at the secondary structure level
Bioinformatics 2000 16: 257-268; doi:10.1093/bioinformatics/16.3.257 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Peter D. Karp

An ontology for biological function based on molecular interactions
Bioinformatics 2000 16: 269-285; doi:10.1093/bioinformatics/16.3.269 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Christophe Blanchet, Christophe Combet, Christophe Geourjon, and Gilbert Deléage

MPSA: integrated system for multiple protein sequence analysis with client/server capabilities
Bioinformatics 2000 16: 286-287; doi:10.1093/bioinformatics/16.3.286 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Guochun Xie, Reynold DeMarco, Richard Blevins, and Yuhong Wang

Storing biological sequence databases in relational form
Bioinformatics 2000 16: 288-289; doi:10.1093/bioinformatics/16.3.288 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Peter B. McGarvey, Hongzhan Huang, Winona C. Barker, Bruce C. Orcutt, John S. Garavelli, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Chunlin Xiao, and Cathy H. Wu

PIR: a new resource for bioinformatics
Bioinformatics 2000 16: 290-291; doi:10.1093/bioinformatics/16.3.290 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Angelo M. Facchiano

HELM: searching for helix motifs within protein sequences
Bioinformatics 2000 16: 292-293; doi:10.1093/bioinformatics/16.3.292 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

T. Massingham and N. Goldman

EDIBLE: experimental design and information calculations in phylogenetics
Bioinformatics 2000 16: 294-295; doi:10.1093/bioinformatics/16.3.294 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Marc Robinson-Rechavi and Dorothée Huchon

RRTree: Relative-Rate Tests between groups of sequences on a phylogenetic tree
Bioinformatics 2000 16: 296-297; doi:10.1093/bioinformatics/16.3.296 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Stephen Wooding

PRoMT: inferring demographic history from DNA sequences
Bioinformatics 2000 16: 298-299; doi:10.1093/bioinformatics/16.3.298 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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