Bioinformatics

EDITORIAL:

Philip E. Bourne and Michael Gribskov

ISMB-2000: Bioinformatics enters a new millennium
Bioinformatics 2000 16: 749; doi:10.1093/bioinformatics/16.9.749 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

F. Plewniak, J. D. Thompson, and O. Poch

Ballast: Blast post-processing based on locally conserved segments
Bioinformatics 2000 16: 750-759; doi:10.1093/bioinformatics/16.9.750 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Pauline C. Ng, Jorja G. Henikoff, and Steven Henikoff

PHAT: a transmembrane-specific substitution matrix
Bioinformatics 2000 16: 760-766; doi:10.1093/bioinformatics/16.9.760 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Junhyong Kim, Etsuko N. Moriyama, Coral G. Warr, Peter J. Clyne, and John R. Carlson

Identification of novel multi-transmembrane proteins from genomic databases using quasi-periodic structural properties
Bioinformatics 2000 16: 767-775; doi:10.1093/bioinformatics/16.9.767 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Naomi Siew, Arne Elofsson, Leszek Rychlewski, and Daniel Fischer

MaxSub: an automated measure for the assessment of protein structure prediction quality
Bioinformatics 2000 16: 776-785; doi:10.1093/bioinformatics/16.9.776 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rui Alves and Michael A. Savageau

Extending the method of mathematically controlled comparison to include numerical comparisons
Bioinformatics 2000 16: 786-798; doi:10.1093/bioinformatics/16.9.786 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

GCB'99 PAPERS PRESENTED AT THE GERMAN CONFERENCE ON BIOINFORMATICS, 1999, HANOVER:

A. Zien, G. Rätsch, S. Mika, B. Schölkopf, T. Lengauer, and K.-R. Müller

Engineering support vector machine kernels that recognize translation initiation sites
Bioinformatics 2000 16: 799-807; doi:10.1093/bioinformatics/16.9.799 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Knut Reinert, Jens Stoye, and Torsten Will

An iterative method for faster sum-of-pairs multiple sequence alignment
Bioinformatics 2000 16: 808-814; doi:10.1093/bioinformatics/16.9.808 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Oliver Kohlbacher and Hans-Peter Lenhof

BALL—rapid software prototyping in computational molecular biology
Bioinformatics 2000 16: 815-824; doi:10.1093/bioinformatics/16.9.815 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Robert Küffner, Ralf Zimmer, and Thomas Lengauer

Pathway analysis in metabolic databases via differential metabolic display (DMD)
Bioinformatics 2000 16: 825-836; doi:10.1093/bioinformatics/16.9.825 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

DISCOVERY NOTES:

M. M. Soloviev

Detection of a surface-exposed PEST like sequence in the metabotropic glutamate receptor mGluR1
Bioinformatics 2000 16: 837-838; doi:10.1093/bioinformatics/16.9.837 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

T. V. Gnanasekaran, Suraj Peri, A. Arockiasamy, and S. Krishnaswamy

Profiles from structure based sequence alignment of porins can identify ß stranded integral membrane proteins
Bioinformatics 2000 16: 839-842; doi:10.1093/bioinformatics/16.9.839 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Michael C. Giddings, Olga V. Matveeva, John F. Atkins, and Raymond F. Gesteland

ODNBase—a web database for antisense oligonucleotide effectiveness studies
Bioinformatics 2000 16: 843-844; doi:10.1093/bioinformatics/16.9.843 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Martin Prokop, Jirí Damborský, and Jaroslav Koca

TRITON: in silico construction of protein mutants and prediction of their activities
Bioinformatics 2000 16: 845-846; doi:10.1093/bioinformatics/16.9.845 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Bernhard Haubold and Richard R. Hudson

LIAN 3.0: detecting linkage disequilibrium in multilocus data
Bioinformatics 2000 16: 847-849; doi:10.1093/bioinformatics/16.9.847 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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