Bioinformatics

EDITORIAL:

Mark Borodovsky, Eugene Koonin, Chris Burge, Jim Fickett, John Logsdon, Andrej Sali, Gary Stormo, and Igor Zhulin

THE THIRD GEORGIA TECH–EMORY INTERNATIONAL CONFERENCE ON BIOINFORMATICS: IN SILICO BIOLOGY; BIOINFORMATICS AFTER HUMAN GENOME (NOVEMBER 15–18, 2001, ATLANTA, GEORGIA, USA)
Bioinformatics 2001 17: 859-861; doi:10.1093/bioinformatics/17.10.859 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Vinhthuy T. Phan and Steven S. Skiena

Dealing with errors in interactive sequencing by hybridization
Bioinformatics 2001 17: 862-870; doi:10.1093/bioinformatics/17.10.862 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Samuel Levy, Sridhar Hannenhalli, and Christopher Workman

Enrichment of regulatory signals in conserved non-coding genomic sequence
Bioinformatics 2001 17: 871-877; doi:10.1093/bioinformatics/17.10.871 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Martin C. Frith, Ulla Hansen, and Zhiping Weng

Detection of cis -element clusters in higher eukaryotic DNA
Bioinformatics 2001 17: 878-889; doi:10.1093/bioinformatics/17.10.878 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Igor B. Rogozin, Alexey V. Kochetov, Fyodor A. Kondrashov, Eugene V. Koonin, and Luciano Milanesi

Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a ‘weak’ context of the start codon
Bioinformatics 2001 17: 890-900; doi:10.1093/bioinformatics/17.10.890 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eileen Kraemer, Jian Wang, Jinhua Guo, Samuel Hopkins, and Jonathan Arnold

An analysis of gene-finding programs for Neurospora crassa
Bioinformatics 2001 17: 901-912; doi:10.1093/bioinformatics/17.10.901 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Artemis G. Hatzigeorgiou, Petko Fiziev, and Martin Reczko

DIANA-EST: a statistical analysis
Bioinformatics 2001 17: 913-919; doi:10.1093/bioinformatics/17.10.913 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ernst Kretschmann, Wolfgang Fleischmann, and Rolf Apweiler

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT
Bioinformatics 2001 17: 920-926; doi:10.1093/bioinformatics/17.10.920 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Gill Bejerano, Yevgeny Seldin, Hanah Margalit, and Naftali Tishby

Markovian domain fingerprinting: statistical segmentation of protein sequences
Bioinformatics 2001 17: 927-934; doi:10.1093/bioinformatics/17.10.927 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, and Rainer Schrader

Clustering protein sequences—structure prediction by transitive homology
Bioinformatics 2001 17: 935-941; doi:10.1093/bioinformatics/17.10.935 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

R. R. Mallios

Predicting class II MHC/peptide multi-level binding with an iterative stepwise discriminant analysis meta-algorithm
Bioinformatics 2001 17: 942-948; doi:10.1093/bioinformatics/17.10.942 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jerry Tsai, Neil Voss, and Mark Gerstein

Determining the minimum number of types necessary to represent the sizes of protein atoms
Bioinformatics 2001 17: 949-956; doi:10.1093/bioinformatics/17.10.949 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Piero Fariselli and Rita Casadio

Prediction of disulfide connectivity in proteins
Bioinformatics 2001 17: 957-964; doi:10.1093/bioinformatics/17.10.957 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

I. King Jordan, G. Reid Bishop, and Daniel S. Gonzalez

Sequence and structural aspects of functional diversification in class I -mannosidase evolution
Bioinformatics 2001 17: 965-976; doi:10.1093/bioinformatics/17.10.965 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

K. Y. Yeung, C. Fraley, A. Murua, A. E. Raftery, and W. L. Ruzzo

Model-based clustering and data transformations for gene expression data
Bioinformatics 2001 17: 977-987; doi:10.1093/bioinformatics/17.10.977 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Andrey Rzhetsky and Shawn M. Gomez

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome
Bioinformatics 2001 17: 988-996; doi:10.1093/bioinformatics/17.10.988 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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