Bioinformatics

EDITORIAL:

Nikolay Kolchanov and Charlie Hodgman

The 2nd international conference on the Bioinformatics of Genome Regulation and Structure (BGRS-2000), Novosibirsk, August 2000
Bioinformatics 2001 17: 997; doi:10.1093/bioinformatics/17.11.997 [Print PDF][Screen PDF] [Request Permissions]  

BGRS PAPERS:

Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, and Nikolay L. Podkolodny

Nucleosome formation potential of eukaryotic DNA: calculation and promoters analysis
Bioinformatics 2001 17: 998-1010; doi:10.1093/bioinformatics/17.11.998 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

P. S. Novichkov, M. S. Gelfand, and A. A. Mironov

Gene recognition in eukaryotic DNA by comparison of genomic sequences
Bioinformatics 2001 17: 1011-1018; doi:10.1093/bioinformatics/17.11.1011 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Szymon M. Kielbasa, Jan O. Korbel, Dieter Beule, Johannes Schuchhardt, and Hanspeter Herzel

Combining frequency and positional information to predict transcription factor binding sites
Bioinformatics 2001 17: 1019-1026; doi:10.1093/bioinformatics/17.11.1019 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, and Akinori Sarai

Thermodynamic database for protein–nucleic acid interactions (ProNIT)
Bioinformatics 2001 17: 1027-1034; doi:10.1093/bioinformatics/17.11.1027 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

D. A. Afonnikov, D. Yu. Oshchepkov, and N. A. Kolchanov

Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions
Bioinformatics 2001 17: 1035-1046; doi:10.1093/bioinformatics/17.11.1035 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eugenia Migliavacca, Alexei A. Adzhubei, and Manuel C. Peitsch

MDB: a database system utilizing automatic construction of modules and STAR-derived universal language
Bioinformatics 2001 17: 1047-1052; doi:10.1093/bioinformatics/17.11.1047 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Frank Schacherer, Claudia Choi, Ulrike Götze, Mathias Krull, Susanne Pistor, and Edgar Wingender

The TRANSPATH signal transduction database: a knowledge base on signal transduction networks
Bioinformatics 2001 17: 1053-1057; doi:10.1093/bioinformatics/17.11.1053 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rosel Kretschmer-Kazemi Far, Wolfgang Nedbal, and Georg Sczakiel

Concepts to automate the theoretical design of effective antisense oligonucleotides
Bioinformatics 2001 17: 1058-1061; doi:10.1093/bioinformatics/17.11.1058 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

DISCOVERY NOTES:

Victor G. Levitsky, Olga A. Podkolodnaya, Nikolay A. Kolchanov, and Nikolay L. Podkolodny

Nucleosome formation potential of exons, introns, and Alu repeats
Bioinformatics 2001 17: 1062-1064; doi:10.1093/bioinformatics/17.11.1062 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Vasily E. Ramensky, Vsevolod Ju. Makeev, Mikhail A. Roytberg, and Vladimir G. Tumanyan

Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software
Bioinformatics 2001 17: 1065-1066; doi:10.1093/bioinformatics/17.11.1065 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Fugen Li and Gary D. Stormo

Selection of optimal DNA oligos for gene expression arrays
Bioinformatics 2001 17: 1067-1076; doi:10.1093/bioinformatics/17.11.1067 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Man-Suen Chan, Martin C. J. Maiden, and Brian G. Spratt

Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens
Bioinformatics 2001 17: 1077-1083; doi:10.1093/bioinformatics/17.11.1077 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

P. S. Umesh Adiga, A. Bhomra, M. G. Turri, A. Nicod, S. R. Datta, P. Jeavons, R. Mott, and J. Flint

Automatic analysis of agarose gel images
Bioinformatics 2001 17: 1084-1089; doi:10.1093/bioinformatics/17.11.1084 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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