Bioinformatics

David States

Time to defend what we have won
Bioinformatics 2001 17: 299; doi:10.1093/bioinformatics/17.4.299 [Print PDF][Screen PDF] [Request Permissions]  

C. Stoeckert, A. Pizarro, E. Manduchi, M. Gibson, B. Brunk, J. Crabtree, J. Schug, S. Shen-Orr, and G. C. Overton

A relational schema for both array-based and SAGE gene expression experiments
Bioinformatics 2001 17: 300-308; doi:10.1093/bioinformatics/17.4.300 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

K. Y. Yeung, D. R. Haynor, and W. L. Ruzzo

Validating clustering for gene expression data
Bioinformatics 2001 17: 309-318; doi:10.1093/bioinformatics/17.4.309 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, and Jacques Corbeil

Use of keyword hierarchies to interpret gene expression patterns
Bioinformatics 2001 17: 319-326; doi:10.1093/bioinformatics/17.4.319 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Abdullah N. Arslan, Ömer Egecioglu, and Pavel A. Pevzner

A new approach to sequence comparison: normalized sequence alignment
Bioinformatics 2001 17: 327-337; doi:10.1093/bioinformatics/17.4.327 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rainer Spang and Martin Vingron

Limits of homology detection by pairwise sequence comparison
Bioinformatics 2001 17: 338-342; doi:10.1093/bioinformatics/17.4.338 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Christian E. V. Storm and Erik L. L. Sonnhammer

NIFAS: visual analysis of domain evolution in proteins
Bioinformatics 2001 17: 343-348; doi:10.1093/bioinformatics/17.4.343 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Chris H.Q. Ding and Inna Dubchak

Multi-class protein fold recognition using support vector machines and neural networks
Bioinformatics 2001 17: 349-358; doi:10.1093/bioinformatics/17.4.349 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Edward M. Marcotte, Ioannis Xenarios, and David Eisenberg

Mining literature for protein–protein interactions
Bioinformatics 2001 17: 359-363; doi:10.1093/bioinformatics/17.4.359 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Hubert Hug and Rainer Schuler

Strategies for the development of a peptide computer
Bioinformatics 2001 17: 364-368; doi:10.1093/bioinformatics/17.4.364 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

B. Dysvik and I. Jonassen

J-Express: exploring gene expression data using Java
Bioinformatics 2001 17: 369-370; doi:10.1093/bioinformatics/17.4.369 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

J. L. Lessem and S. S. Cherny

DeFries–Fulker multiple regression analysis of sibship QTL data: a SAS^®macro
Bioinformatics 2001 17: 371-372; doi:10.1093/bioinformatics/17.4.371 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Cédric Notredame

Mocca: semi-automatic method for domain hunting
Bioinformatics 2001 17: 373-374; doi:10.1093/bioinformatics/17.4.373 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

S. Sujatha, S. Balaji, and N. Srinivasan

PALI: a database of alignments and phylogeny of homologous protein structures
Bioinformatics 2001 17: 375-376; doi:10.1093/bioinformatics/17.4.375 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Christoph Gille and Cornelius Frömmel

STRAP: editor for STRuctural Alignments of Proteins
Bioinformatics 2001 17: 377-378; doi:10.1093/bioinformatics/17.4.377 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kim Lan Sim, Tomoyuki Uchida, and Satoru Miyano

ProDDO: a database of disordered proteins from the Protein Data Bank (PDB)
Bioinformatics 2001 17: 379-380; doi:10.1093/bioinformatics/17.4.379 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eran Eyal, Rafael Najmanovich, Vladimir Sobolev, and Marvin Edelman

MutaProt: a web interface for structural analysis of point mutations
Bioinformatics 2001 17: 381-382; doi:10.1093/bioinformatics/17.4.381 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Christian M. Zmasek and Sean R. Eddy

ATV: display and manipulation of annotated phylogenetic trees
Bioinformatics 2001 17: 383-384; doi:10.1093/bioinformatics/17.4.383 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Fiona S. L. Brinkman, Ivan Wan, Robert E. W. Hancock, Ann M. Rose, and Steven J. Jones

PhyloBLAST: facilitating phylogenetic analysis of BLAST results
Bioinformatics 2001 17: 385-387; doi:10.1093/bioinformatics/17.4.385 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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