Bioinformatics

EDITORIAL:

David B. Searls

Reading the book of life
Bioinformatics 2001 17: 579-580; doi:10.1093/bioinformatics/17.7.579 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Xiayi Ke, William Tapper, and Andrew Collins

LDB2000: sequence-based integrated maps of the human genome
Bioinformatics 2001 17: 581-586; doi:10.1093/bioinformatics/17.7.581 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Barbara A. Eckman, Anthony S. Kosky, and Leonardo A. Laroco, Jr

Extending traditional query-based integration approaches for functional characterization of post-genomic data
Bioinformatics 2001 17: 587-601; doi:10.1093/bioinformatics/17.7.587 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jack E. Tabaska, Ramana V. Davuluri, and Michael Q. Zhang

Identifying the 3'-terminal exon in human DNA
Bioinformatics 2001 17: 602-607; doi:10.1093/bioinformatics/17.7.602 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Debraj GuhaThakurta and Gary D. Stormo

Identifying target sites for cooperatively binding factors
Bioinformatics 2001 17: 608-621; doi:10.1093/bioinformatics/17.7.608 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rongxiang Liu, Thomas W. Blackwell, and David J. States

Conformational model for binding site recognition by the E.coli MetJ transcription factor
Bioinformatics 2001 17: 622-633; doi:10.1093/bioinformatics/17.7.622 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Matthias Steinfath, Wasco Wruck, Henrik Seidel, Hans Lehrach, Uwe Radelof, and John O’Brien

Automated image analysis for array hybridization experiments
Bioinformatics 2001 17: 634-641; doi:10.1093/bioinformatics/17.7.634 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

J. Gorodkin, C. Zwieb, and B. Knudsen

Semi-automated update and cleanup of structural RNA alignment databases
Bioinformatics 2001 17: 642-645; doi:10.1093/bioinformatics/17.7.642 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Steffen Möller, Michael D. R. Croning, and Rolf Apweiler

Evaluation of methods for the prediction of membrane spanning regions
Bioinformatics 2001 17: 646-653; doi:10.1093/bioinformatics/17.7.646 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Jochen Hampe, Andreas Wollstein, Timothy Lu, Hans-Jürgen Frevel, Marcus Will, Carl Manaster, and Stefan Schreiber

An integrated system for high throughput TaqMan^TM based SNP genotyping
Bioinformatics 2001 17: 654-655; doi:10.1093/bioinformatics/17.7.654 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Raf M. Podowski and Erik L. L. Sonnhammer

MEDUSA: large scale automatic selection and visual assessment of PCR primer pairs
Bioinformatics 2001 17: 656-657; doi:10.1093/bioinformatics/17.7.656 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Rob M. Ewing and J. Michael Cherry

Visualization of expression clusters using Sammon’s non-linear mapping
Bioinformatics 2001 17: 658-659; doi:10.1093/bioinformatics/17.7.658 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yoshiyuki Suzuki, Takashi Gojobori, and Masatoshi Nei

ADAPTSITE: detecting natural selection at single amino acid sites
Bioinformatics 2001 17: 660-661; doi:10.1093/bioinformatics/17.7.660 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Alexei Drummond and Korbinian Strimmer

PAL: an object-oriented programming library for molecular evolution and phylogenetics
Bioinformatics 2001 17: 662-663; doi:10.1093/bioinformatics/17.7.662 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Vladimir Makarenkov

T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks
Bioinformatics 2001 17: 664-668; doi:10.1093/bioinformatics/17.7.664 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ralf Mrowka

A Java applet for visualizing protein–protein interaction
Bioinformatics 2001 17: 669-671; doi:10.1093/bioinformatics/17.7.669 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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