Bioinformatics

ORIGINAL PAPERS:

Meena K. Sakharkar, Tin Wee Tan, and Sandro J. de Souza

Generation of a database containing discordant intron positions in eukaryotic genes (MIDB)
Bioinformatics 2001 17: 671-675; doi:10.1093/bioinformatics/17.8.671 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Avril Coghlan, Dónall A. Mac Dónaill, and Nigel H. Buttimore

Representation of amino acids as five-bit or three-bit patterns for filtering protein databases
Bioinformatics 2001 17: 676-685; doi:10.1093/bioinformatics/17.8.676 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Zsuzsanna Dosztányi and Andrew E. Torda

Amino acid similarity matrices based on force fields
Bioinformatics 2001 17: 686-699; doi:10.1093/bioinformatics/17.8.686 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jimin Pei and Nick V. Grishin

AL2CO: calculation of positional conservation in a protein sequence alignment
Bioinformatics 2001 17: 700-712; doi:10.1093/bioinformatics/17.8.700 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Kevin Karplus and Birong Hu

Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set
Bioinformatics 2001 17: 713-720; doi:10.1093/bioinformatics/17.8.713 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sujun Hua and Zhirong Sun

Support vector machine approach for protein subcellular localization prediction
Bioinformatics 2001 17: 721-728; doi:10.1093/bioinformatics/17.8.721 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

W. R. Pitt, M. A. Williams, M. Steven, B. Sweeney, A. J. Bleasby, and D. S. Moss

The Bioinformatics Template Library—generic components for biocomputing
Bioinformatics 2001 17: 729-737; doi:10.1093/bioinformatics/17.8.729 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

David G. Cox and Federico Canzian

Genotype transposer: automated genotype manipulation for linkage disequilibrium analysis
Bioinformatics 2001 17: 738-739; doi:10.1093/bioinformatics/17.8.738 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yang He, Xiangming Xu, Kenneth R. Tobutt, and Martin S. Ridout

Polylink: to support two-point linkage analysis in autotetraploids
Bioinformatics 2001 17: 740-741; doi:10.1093/bioinformatics/17.8.740 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Gonçalo R. Abecasis, Stacey S. Cherny, W. O. C. Cookson, and Lon R. Cardon

GRR: graphical representation of relationship errors
Bioinformatics 2001 17: 742-743; doi:10.1093/bioinformatics/17.8.742 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Liqun Xing and Volker Brendel

Multi-query sequence BLAST output examination with MuSeqBox
Bioinformatics 2001 17: 744-745; doi:10.1093/bioinformatics/17.8.744 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Marc A. Martí-Renom, Valentin A. Ilyin, and Andrej Sali

DBAli: a database of protein structure alignments
Bioinformatics 2001 17: 746-747; doi:10.1093/bioinformatics/17.8.746 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

P. I. W. de Bakker, A. Bateman, D. F. Burke, R. N. Miguel, K. Mizuguchi, J. Shi, H. Shirai, and T. L. Blundell

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families
Bioinformatics 2001 17: 748-749; doi:10.1093/bioinformatics/17.8.748 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Janusz M. Bujnicki, Arne Elofsson, Daniel Fischer, and Leszek Rychlewski

Structure prediction meta server
Bioinformatics 2001 17: 750-751; doi:10.1093/bioinformatics/17.8.750 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Dominique Douguet and Gilles Labesse

Easier threading through web-based comparisons and cross-validations
Bioinformatics 2001 17: 752-753; doi:10.1093/bioinformatics/17.8.752 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

John P. Huelsenbeck and Fredrik Ronquist

MRBAYES: Bayesian inference of phylogenetic trees
Bioinformatics 2001 17: 754-755; doi:10.1093/bioinformatics/17.8.754 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Chenna Ramu

SIR: a simple indexing and retrieval system for biological flat file databases
Bioinformatics 2001 17: 756-758; doi:10.1093/bioinformatics/17.8.756 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ERRATA:

Erratum
Bioinformatics 2001 17: 759; doi:10.1093/bioinformatics/17.8.759 [Print PDF][Screen PDF] [Request Permissions]  

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