Bioinformatics -- Table of Contents (18 [11])

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Contents: Volume 18, Number 11, November 1 2002   [Index by Author]      Other Issues:

       EDITORIAL

       ORIGINAL PAPERS

       DISCOVERY NOTES

       APPLICATIONS NOTES

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EDITORIAL:

Catherine A. Ball, Gavin Sherlock, Helen Parkinson, Philippe Rocca-Sera, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul Spellman, Christian J. Stoeckert, Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, and John Quackenbush: An open letter to the scientific journals
Bioinformatics 2002 18: 1409; doi:10.1093/bioinformatics/18.11.1409 [Print PDF][Screen PDF] [Request Permissions]

ORIGINAL PAPERS:

Amit V. Kulkarni, Noelle Sevilir Williams, Yun Lian, Jonathan D. Wren, David Mittelman, Alexander Pertsemlidis, and Harold R. Garner: ARROGANT: an application to manipulate large gene collections
Bioinformatics 2002 18: 1410-1417; doi:10.1093/bioinformatics/18.11.1410 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Nikola Stojanovic, Jean L. Chang, Jessica Lehoczky, Michael C. Zody, and Ken Dewar: Identification of mixups among DNA sequencing plates
Bioinformatics 2002 18: 1418-1426; doi:10.1093/bioinformatics/18.11.1418 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Long-Cheng Li and Rajvir Dahiya: MethPrimer: designing primers for methylation PCRs
Bioinformatics 2002 18: 1427-1431; doi:10.1093/bioinformatics/18.11.1427 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, and Ying Xu: PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis
Bioinformatics 2002 18: 1432-1437; doi:10.1093/bioinformatics/18.11.1432 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

K. Dobbin and R. Simon: Comparison of microarray designs for class comparison and class discovery
Bioinformatics 2002 18: 1438-1445; doi:10.1093/bioinformatics/18.11.1438 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Seferina Mavroudi, Stergios Papadimitriou, and Anastasios Bezerianos: Gene expression data analysis with a dynamically extended self-organized map that exploits class information
Bioinformatics 2002 18: 1446-1453; doi:10.1093/bioinformatics/18.11.1446 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Olga G. Troyanskaya, Mitchell E. Garber, Patrick O. Brown, David Botstein, and Russ B. Altman: Nonparametric methods for identifying differentially expressed genes in microarray data
Bioinformatics 2002 18: 1454-1461; doi:10.1093/bioinformatics/18.11.1454 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Lisa M. McShane, Michael D. Radmacher, Boris Freidlin, Ren Yu, Ming-Chung Li, and Richard Simon: Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data
Bioinformatics 2002 18: 1462-1469; doi:10.1093/bioinformatics/18.11.1462 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

William J. Lemon, Jeffrey J.T. Palatini, Ralf Krahe, and Fred A. Wright: Theoretical and experimental comparisons of gene expression indexes for oligonucleotide arrays
Bioinformatics 2002 18: 1470-1476; doi:10.1093/bioinformatics/18.11.1470 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

M.J.L. de Hoon, S. Imoto, and S. Miyano: Statistical analysis of a small set of time-ordered gene expression data using linear splines
Bioinformatics 2002 18: 1477-1485; doi:10.1093/bioinformatics/18.11.1477 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Ashish Bhan, David J. Galas, and T. Gregory Dewey: A duplication growth model of gene expression networks
Bioinformatics 2002 18: 1486-1493; doi:10.1093/bioinformatics/18.11.1486 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jonathan M. Keith, Peter Adams, Darryn Bryant, Dirk P. Kroese, Keith R. Mitchelson, Duncan A.E. Cochran, and Gita H. Lala: A simulated annealing algorithm for finding consensus sequences
Bioinformatics 2002 18: 1494-1499; doi:10.1093/bioinformatics/18.11.1494 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

J.T. Reese and W.R. Pearson: Empirical determination of effective gap penalties for sequence comparison
Bioinformatics 2002 18: 1500-1507; doi:10.1093/bioinformatics/18.11.1500 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Harpreet Kaur and G.P.S. Raghava: An evaluation of ß-turn prediction methods
Bioinformatics 2002 18: 1508-1514; doi:10.1093/bioinformatics/18.11.1508 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Julie E. Leonard, Jeffrey B. Colombe, and Joshua L. Levy: Finding relevant references to genes and proteins in Medline using a Bayesian approach
Bioinformatics 2002 18: 1515-1522; doi:10.1093/bioinformatics/18.11.1515 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Vyacheslav N. Grishin and Nick V. Grishin: Euclidian space and grouping of biological objects
Bioinformatics 2002 18: 1523-1534; doi:10.1093/bioinformatics/18.11.1523 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

DISCOVERY NOTES:

Stefan Janecek: A motif of a microbial starch-binding domain found in human genethonin
Bioinformatics 2002 18: 1534-1537; doi:10.1093/bioinformatics/18.11.1534 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

APPLICATIONS NOTES:

Sheldon J. McKay and Steven J.M. Jones: AcePrimer: automation of PCR primer design based on gene structure
Bioinformatics 2002 18: 1538-1539; doi:10.1093/bioinformatics/18.11.1538 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Carlo Colantuoni, George Henry, Scott Zeger, and Jonathan Pevsner: SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis
Bioinformatics 2002 18: 1540-1541; doi:10.1093/bioinformatics/18.11.1540 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Marilyn Safran, Irina Solomon, Orit Shmueli, Michal Lapidot, Shai Shen-Orr, Avital Adato, Uri Ben-Dor, Nir Esterman, Naomi Rosen, Inga Peter, Tsviya Olender, Vered Chalifa-Caspi, and Doron Lancet: GeneCards^TM 2002: towards a complete, object-oriented, human gene compendium
Bioinformatics 2002 18: 1542-1543; doi:10.1093/bioinformatics/18.11.1542 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Angelika Ehlers, John Osborne, Stephanie Slack, Rachel L. Roper, and Chris Upton: Poxvirus Orthologous Clusters (POCs)
Bioinformatics 2002 18: 1544-1545; doi:10.1093/bioinformatics/18.11.1544 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Kevin Howe, Alex Bateman, and Richard Durbin: QuickTree: building huge Neighbour-Joining trees of protein sequences
Bioinformatics 2002 18: 1546-1547; doi:10.1093/bioinformatics/18.11.1546 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

S.S. Sheik, P. Sundararajan, A.S.Z. Hussain, and K. Sekar: Ramachandran plot on the web
Bioinformatics 2002 18: 1548-1549; doi:10.1093/bioinformatics/18.11.1548 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Online ISSN 1460-2059 - Print ISSN 1367-4803

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