Bioinformatics -- Table of Contents (18 [12])

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Contents: Volume 18, Number 12, December 1 2002   [Index by Author]      Other Issues:

       EDITORIAL

       REVIEWS

       DISCOVERY NOTES

       ORIGINAL PAPERS

       APPLICATIONS NOTES

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EDITORIAL:

Alfonso Valencia: BIOINFORMATICS: BIOLOGY BY OTHER MEANS
Bioinformatics 2002 18: 1551-1552; doi:10.1093/bioinformatics/18.12.1551 [Print PDF][Screen PDF] [Request Permissions]

REVIEWS:

Lynette Hirschman, Jong C. Park, Junichi Tsujii, Limsoon Wong, and Cathy H. Wu: Accomplishments and challenges in literature data mining for biology
Bioinformatics 2002 18: 1553-1561; doi:10.1093/bioinformatics/18.12.1553 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

DISCOVERY NOTES:

Demelo M. Lao, Masafumi Arai, Masami Ikeda, and Toshio Shimizu: The presence of signal peptide significantly affects transmembrane topology prediction
Bioinformatics 2002 18: 1562-1566; doi:10.1093/bioinformatics/18.12.1562 [Print PDF][Screen PDF] [Request Permissions]

ORIGINAL PAPERS:

Alistair M. Chalk and Erik L. L. Sonnhammer: Computational antisense oligo prediction with a neural network model
Bioinformatics 2002 18: 1567-1575; doi:10.1093/bioinformatics/18.12.1567 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Peter J. Park, Atul J. Butte, and Isaac S. Kohane: Comparing expression profiles of genes with similar promoter regions
Bioinformatics 2002 18: 1576-1584; doi:10.1093/bioinformatics/18.12.1576 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Earl Hubbell, Wei-Min Liu, and Rui Mei: Robust estimators for expression analysis
Bioinformatics 2002 18: 1585-1592; doi:10.1093/bioinformatics/18.12.1585 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

W.-m Liu, R. Mei, X. Di, T. B. Ryder, E. Hubbell, S. Dee, T. A. Webster, C. A. Harrington, M.-h. Ho, J. Baid, and S. P. Smeekens: Analysis of high density expression microarrays with signed-rank call algorithms
Bioinformatics 2002 18: 1593-1599; doi:10.1093/bioinformatics/18.12.1593 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Aedín C. Culhane, Guy Perrière, Elizabeth C. Considine, Thomas G. Cotter, and Desmond G. Higgins: Between-group analysis of microarray data
Bioinformatics 2002 18: 1600-1608; doi:10.1093/bioinformatics/18.12.1600 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Michael A. Black and R. W. Doerge: Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments
Bioinformatics 2002 18: 1609-1616; doi:10.1093/bioinformatics/18.12.1609 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Ann-Marie Martoglio, James W. Miskin, Stephen K. Smith, and David J. C. MacKay: A decomposition model to track gene expression signatures: preview on observer-independent classification of ovarian cancer
Bioinformatics 2002 18: 1617-1624; doi:10.1093/bioinformatics/18.12.1617 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Danh V. Nguyen and David M. Rocke: Partial least squares proportional hazard regression for application to DNA microarray survival data
Bioinformatics 2002 18: 1625-1632; doi:10.1093/bioinformatics/18.12.1625 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

R. Sásik, E. Calvo, and J. Corbeil: Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model
Bioinformatics 2002 18: 1633-1640; doi:10.1093/bioinformatics/18.12.1633 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Walter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, and Christos A. Ouzounis: Modeling the percolation of annotation errors in a database of protein sequences
Bioinformatics 2002 18: 1641-1649; doi:10.1093/bioinformatics/18.12.1641 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

An-Suei Yang and Lu-yong Wang: Local structure-based sequence profile database for local and global protein structure predictions
Bioinformatics 2002 18: 1650-1657; doi:10.1093/bioinformatics/18.12.1650 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

An-Suei Yang: Structure–dependent sequence alignment for remotely related proteins
Bioinformatics 2002 18: 1658-1665; doi:10.1093/bioinformatics/18.12.1658 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Adrian J. Shepherd, Nigel J. Martin, Roger G. Johnson, Paul Kellam, and Christine A. Orengo: PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources
Bioinformatics 2002 18: 1666-1672; doi:10.1093/bioinformatics/18.12.1666 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Mikhail A. Roytberg, Aleksey Y. Ogurtsov, Svetlana A. Shabalina, and Alexey S. Kondrashov: A hierarchical approach to aligning collinear regions of genomes
Bioinformatics 2002 18: 1673-1680; doi:10.1093/bioinformatics/18.12.1673 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

A. Riva and I. S. Kohane: SNPper: retrieval and analysis of human SNPs
Bioinformatics 2002 18: 1681-1685; doi:10.1093/bioinformatics/18.12.1681 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

APPLICATIONS NOTES:

Ralf Mrowka, Johannes Schuchhardt, and Christoph Gille: Oligodb—interactive design of oligo DNA for transcription profiling of human genes
Bioinformatics 2002 18: 1686-1687; doi:10.1093/bioinformatics/18.12.1686 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Xiayi Ke, Andrew Collins, and Shu Ye: PCR designer for restriction analysis of various types of sequence mutation
Bioinformatics 2002 18: 1688-1689; doi:10.1093/bioinformatics/18.12.1688 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jianghui Hou: Design of endonuclease restriction sites into primers for PCR cloning
Bioinformatics 2002 18: 1690-1691; doi:10.1093/bioinformatics/18.12.1690 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

R. Everitt, S. E. Minnema, M. A. Wride, C. S. Koster, J. E. Hance, F. C. Mansergh, and D. E. Rancourt: RED: the analysis, management and dissemination of expressed sequence tags
Bioinformatics 2002 18: 1692-1693; doi:10.1093/bioinformatics/18.12.1692 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Jing Hua Zhao, Sebastien Lissarrague, Laurent Essioux, and Pak Chung Sham: GENECOUNTING: haplotype analysis with missing genotypes
Bioinformatics 2002 18: 1694-1695; doi:10.1093/bioinformatics/18.12.1694 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Xin Chen, Ming Li, Bin Ma, and John Tromp: DNACompress: fast and effective DNA sequence compression
Bioinformatics 2002 18: 1696-1698; doi:10.1093/bioinformatics/18.12.1696 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

L. Z. Sun, Z. L. Ji, X. Chen, J. F. Wang, and Y. Z. Chen: ADME-AP: a database of ADME associated proteins
Bioinformatics 2002 18: 1699-1700; doi:10.1093/bioinformatics/18.12.1699 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

J. M. Kwasigroch, D. Gilis, Y. Dehouck, and M. Rooman: PoPMuSiC, rationally designing point mutations in protein structures
Bioinformatics 2002 18: 1701-1702; doi:10.1093/bioinformatics/18.12.1701 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Aleksey Y. Ogurtsov, Mikhail A. Roytberg, Svetlana A. Shabalina, and Alexey S. Kondrashov: OWEN: aligning long collinear regions of genomes
Bioinformatics 2002 18: 1703-1704; doi:10.1093/bioinformatics/18.12.1703 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Junko Tanoue, Masatoshi Yoshikawa, and Shunsuke Uemura: The GeneAround GO viewer
Bioinformatics 2002 18: 1705-1706; doi:10.1093/bioinformatics/18.12.1705 [Abstract] [Print PDF][Screen PDF] [Request Permissions]

Online ISSN 1460-2059 - Print ISSN 1367-4803

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