Bioinformatics

Christos Ouzounis

Bioinformatics and the theoretical foundations of molecular biology
Bioinformatics 2002 18: 377-378; doi:10.1093/bioinformatics/18.3.377 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Martti T. Tammi, Erik Arner, Tom Britton, and Björn Andersson

Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs
Bioinformatics 2002 18: 379-388; doi:10.1093/bioinformatics/18.3.379 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mattias Wahde, Gregory T. Klus, Michael L. Bittner, Yidong Chen, and Zoltan Szallasi

Assessing the significance of consistently mis-regulated genes in cancer associated gene expression matrices
Bioinformatics 2002 18: 389-394; doi:10.1093/bioinformatics/18.3.389 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

G. Ball, S. Mian, F. Holding, R. O. Allibone, J. Lowe, S. Ali, G. Li, S. McCardle, I. O. Ellis, C. Creaser, and R. C. Rees

An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers
Bioinformatics 2002 18: 395-404; doi:10.1093/bioinformatics/18.3.395 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Winston Patrick Kuo, Tor-Kristian Jenssen, Atul J. Butte, Lucila Ohno-Machado, and Isaac S. Kohane

Analysis of matched mRNA measurements from two different microarray technologies
Bioinformatics 2002 18: 405-412; doi:10.1093/bioinformatics/18.3.405 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

G. J. McLachlan, R. W. Bean, and D. Peel

A mixture model-based approach to the clustering of microarray expression data
Bioinformatics 2002 18: 413-422; doi:10.1093/bioinformatics/18.3.413 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Bioinformatics 2002 18: 423-433; doi:10.1093/bioinformatics/18.3.423 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Martin J. Blythe, Irini A. Doytchinova, and Darren R. Flower

JenPep: a database of quantitative functional peptide data for immunology
Bioinformatics 2002 18: 434-439; doi:10.1093/bioinformatics/18.3.434 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Bin Ma, John Tromp, and Ming Li

PatternHunter: faster and more sensitive homology search
Bioinformatics 2002 18: 440-445; doi:10.1093/bioinformatics/18.3.440 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Pierre Vincens, Anne Badel-Chagnon, Cécile André, and Serge Hazout

D-ASSIRC: distributed program for finding sequence similarities in genomes
Bioinformatics 2002 18: 446-451; doi:10.1093/bioinformatics/18.3.446 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Christopher Lee, Catherine Grasso, and Mark F. Sharlow

Multiple sequence alignment using partial order graphs
Bioinformatics 2002 18: 452-464; doi:10.1093/bioinformatics/18.3.452 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mark Ettinger

The complexity of comparing reaction systems
Bioinformatics 2002 18: 465-469; doi:10.1093/bioinformatics/18.3.465 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Andrzej M. Kierzek

STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm
Bioinformatics 2002 18: 470-481; doi:10.1093/bioinformatics/18.3.470 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Bioinformatics 2002 18: 482-483; doi:10.1093/bioinformatics/18.3.482 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

S. R. Ness, W. Terpstra, M. Krzywinski, M. A. Marra, and S. J. M. Jones

Assembly of fingerprint contigs: parallelized FPC
Bioinformatics 2002 18: 484-485; doi:10.1093/bioinformatics/18.3.484 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jean-Marie Rouillard, Christopher J. Herbert, and Michael Zuker

OligoArray: genome-scale oligonucleotide design for microarrays
Bioinformatics 2002 18: 486-487; doi:10.1093/bioinformatics/18.3.486 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Pinglang Wang, Fei Ding, Hsienyuan Chiang, Robert C. Thompson, Stanley J. Watson, and Fan Meng

ProbeMatchDB—a web database for finding equivalent probes across microarray platforms and species
Bioinformatics 2002 18: 488-489; doi:10.1093/bioinformatics/18.3.488 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

G. Didier, P. Brézellec, E. Remy, and A. Hénaut

GeneANOVA—gene expression analysis of variance
Bioinformatics 2002 18: 490-491; doi:10.1093/bioinformatics/18.3.490 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Glenn Tesler

GRIMM: genome rearrangements web server
Bioinformatics 2002 18: 492-493; doi:10.1093/bioinformatics/18.3.492 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Raphael Leplae and Tim J. P. Hubbard

MaxBench: evaluation of sequence and structure comparison methods
Bioinformatics 2002 18: 494-495; doi:10.1093/bioinformatics/18.3.494 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Robel Y. Kahsay, Guoli Wang, Nataraj Dongre, Guang Gao, and Roland L. Dunbrack, Jr

CASA: a server for the critical assessment of protein sequence alignment accuracy
Bioinformatics 2002 18: 496-497; doi:10.1093/bioinformatics/18.3.496 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Harpreet Kaur and G. P. S. Raghava

BetaTPred: prediction of ß-TURNS in a protein using statistical algorithms
Bioinformatics 2002 18: 498-499; doi:10.1093/bioinformatics/18.3.498 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Xun Gu and Kent Vander Velden

DIVERGE: phylogeny-based analysis for functional–structural divergence of a protein family
Bioinformatics 2002 18: 500-501; doi:10.1093/bioinformatics/18.3.500 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, and Arndt von Haeseler

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
Bioinformatics 2002 18: 502-504; doi:10.1093/bioinformatics/18.3.502 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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