Bioinformatics

Rainer Fuchs

From Sequence to Biology: The Impact on Bioinformatics
Bioinformatics 2002 18: 505-506; doi:10.1093/bioinformatics/18.4.505 [Print PDF][Screen PDF] [Request Permissions]  

Mark Schreiber and Chris Brown

Compensation for nucleotide bias in a genome by representation as a discrete channel with noise
Bioinformatics 2002 18: 507-512; doi:10.1093/bioinformatics/18.4.507 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Steven Hampson, Dennis Kibler, and Pierre Baldi

Distribution patterns of over-represented k-mers in non-coding yeast DNA
Bioinformatics 2002 18: 513-528; doi:10.1093/bioinformatics/18.4.513 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Charles J. Colbourn, Alan C. H. Ling, and Martin Tompa

Construction of optimal quality control for oligo arrays
Bioinformatics 2002 18: 529-535; doi:10.1093/bioinformatics/18.4.529 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ying Xu, Victor Olman, and Dong Xu

Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees
Bioinformatics 2002 18: 536-545; doi:10.1093/bioinformatics/18.4.536 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Wei Pan

A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
Bioinformatics 2002 18: 546-554; doi:10.1093/bioinformatics/18.4.546 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ilya Shmulevich and Wei Zhang

Binary analysis and optimization-based normalization of gene expression data
Bioinformatics 2002 18: 555-565; doi:10.1093/bioinformatics/18.4.555 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

T. D. Moloshok, R. R. Klevecz, J. D. Grant, F. J. Manion, W. F. Speier, IV, and M. F. Ochs

Application of Bayesian Decomposition for analysing microarray data
Bioinformatics 2002 18: 566-575; doi:10.1093/bioinformatics/18.4.566 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

David C. Hoyle, Magnus Rattray, Ray Jupp, and Andrew Brass

Making sense of microarray data distributions
Bioinformatics 2002 18: 576-584; doi:10.1093/bioinformatics/18.4.576 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Dov Greenbaum, Ronald Jansen, and Mark Gerstein

Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts
Bioinformatics 2002 18: 585-596; doi:10.1093/bioinformatics/18.4.585 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Daniel Aguilar, Baldomero Oliva, Francesc X. Aviles, and Enrique Querol

TranScout: prediction of gene expression regulatory proteins from their sequences
Bioinformatics 2002 18: 597-607; doi:10.1093/bioinformatics/18.4.597 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Shigeki Mitaku, Takatsugu Hirokawa, and Toshiyuki Tsuji

Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane–water interfaces
Bioinformatics 2002 18: 608-616; doi:10.1093/bioinformatics/18.4.608 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mauro Delorenzi and Terry Speed

An HMM model for coiled-coil domains and a comparison with PSSM-based predictions
Bioinformatics 2002 18: 617-625; doi:10.1093/bioinformatics/18.4.617 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Riccardo Bennett-Lovsey, Sarah E. Hart, Hiroki Shirai, and Kenji Mizuguchi

The SWIB and the MDM2 domains are homologous and share a common fold
Bioinformatics 2002 18: 626-630; doi:10.1093/bioinformatics/18.4.626 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Loïc Ponger and Dominique Mouchiroud

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
Bioinformatics 2002 18: 631-633; doi:10.1093/bioinformatics/18.4.631 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Adalberto T. Castelo, Wellington Martins, and Guang R. Gao

TROLL—Tandem Repeat Occurrence Locator
Bioinformatics 2002 18: 634-636; doi:10.1093/bioinformatics/18.4.634 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Maria Elena Ochagavia, Jean Richelle, and Shoshana J. Wodak

Advanced pairwise structure alignments of proteins and analysis of conformational changes
Bioinformatics 2002 18: 637-640; doi:10.1093/bioinformatics/18.4.637 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

M. Madan Babu and K. Sankaran

DOLOP—database of bacterial lipoproteins
Bioinformatics 2002 18: 641-643; doi:10.1093/bioinformatics/18.4.641 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Filippo Rusconi and Maya Belghazi

Desktop prediction/analysis of mass spectrometric data in proteomic projects by using massXpert
Bioinformatics 2002 18: 644-645; doi:10.1093/bioinformatics/18.4.644 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Coral del Val, Peter Ernst, Rüdiger Bräuning, Karl-Heinz Glatting, and Sandor Suhai

PATH: a task for the inference of phylogenies
Bioinformatics 2002 18: 646-647; doi:10.1093/bioinformatics/18.4.646 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Corrigendum
Bioinformatics 2002 18: 648; doi:10.1093/bioinformatics/18.4.648 [Print PDF][Screen PDF] [Request Permissions]  

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