Bioinformatics

EDITORIAL:

Ken Nishikawa

Information Concept in Biology
Bioinformatics 2002 18: 649-651; doi:10.1093/bioinformatics/18.5.649 [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

Jacek Blazewicz, Piotr Formanowicz, Frederic Guinand, and Marta Kasprzak

A heuristic managing errors for DNA sequencing
Bioinformatics 2002 18: 652-660; doi:10.1093/bioinformatics/18.5.652 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Zhou Yu, Tao Li, Jindong Zhao, and Jingchu Luo

PGAAS: a prokaryotic genome assembly assistant system
Bioinformatics 2002 18: 661-665; doi:10.1093/bioinformatics/18.5.661 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yu-hua Hao and Zheng Tan

The generation of long telomere overhangs in human cells: a model and its implication
Bioinformatics 2002 18: 666-671; doi:10.1093/bioinformatics/18.5.666 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

M. Mar Albà, Roman A. Laskowski, and John M. Hancock

Detecting cryptically simple protein sequences using the SIMPLE algorithm
Bioinformatics 2002 18: 672-678; doi:10.1093/bioinformatics/18.5.672 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Olga G. Troyanskaya, Ora Arbell, Yair Koren, Gad M. Landau, and Alexander Bolshoy

Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity
Bioinformatics 2002 18: 679-688; doi:10.1093/bioinformatics/18.5.679 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Nela Zavaljevski, Fred J. Stevens, and Jaques Reifman

Support vector machines with selective kernel scaling for protein classification and identification of key amino acid positions
Bioinformatics 2002 18: 689-696; doi:10.1093/bioinformatics/18.5.689 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ernesto Estrada

Characterization of the folding degree of proteins
Bioinformatics 2002 18: 697-704; doi:10.1093/bioinformatics/18.5.697 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

T. Oyama, K. Kitano, K. Satou, and T. Ito

Extraction of knowledge on protein--protein interaction by association rule discovery
Bioinformatics 2002 18: 705-714; doi:10.1093/bioinformatics/18.5.705 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Suzanne M. Paley and Peter D. Karp

Evaluation of computational metabolic-pathway predictions for Helicobacter pylori
Bioinformatics 2002 18: 715-724; doi:10.1093/bioinformatics/18.5.715 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jinyan Li and Limsoon Wong

Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns
Bioinformatics 2002 18: 725-734; doi:10.1093/bioinformatics/18.5.725 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Frank De Smet, Janick Mathys, Kathleen Marchal, Gert Thijs, Bart De Moor, and Yves Moreau

Adaptive quality-based clustering of gene expression profiles
Bioinformatics 2002 18: 735-746; doi:10.1093/bioinformatics/18.5.735 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Daniel Bozinov and Jörg Rahnenführer

Unsupervised technique for robust target separation and analysis of DNA microarray spots through adaptive pixel clustering
Bioinformatics 2002 18: 747-756; doi:10.1093/bioinformatics/18.5.747 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Wasco Wruck, Huw Griffiths, Matthias Steinfath, Hans Lehrach, Uwe Radelof, and John O'Brien

Xdigitise: visualization of hybridization experiments
Bioinformatics 2002 18: 757-760; doi:10.1093/bioinformatics/18.5.757 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Wei Zhu and Volker Brendel

Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions
Bioinformatics 2002 18: 761-762; doi:10.1093/bioinformatics/18.5.761 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

V. Lombard, E. B. Camon, H. E. Parkinson, P. Hingamp, G. Stoesser, and N. Redaschi

EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database
Bioinformatics 2002 18: 763-764; doi:10.1093/bioinformatics/18.5.763 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

J. D. Grant, R. L. Dunbrack, F. J. Manion, and M. F. Ochs

BeoBLAST: distributed BLAST and PSI-BLAST on a Beowulf cluster
Bioinformatics 2002 18: 765-766; doi:10.1093/bioinformatics/18.5.765 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Patrice Gouet and Emmanuel Courcelle

ENDscript: a workflow to display sequence and structure information
Bioinformatics 2002 18: 767-768; doi:10.1093/bioinformatics/18.5.767 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Flavio Monigatti, Elisabeth Gasteiger, Amos Bairoch, and Eva Jung

The Sulfinator: predicting tyrosine sulfation sites in protein sequences
Bioinformatics 2002 18: 769-770; doi:10.1093/bioinformatics/18.5.769 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

M. R. Fielden, R. G. Halgren, E. Dere, and T. R. Zacharewski

GP3: GenePix post-processing program for automated analysis of raw microarray data
Bioinformatics 2002 18: 771-773; doi:10.1093/bioinformatics/18.5.771 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mary E. Edgerton, Ronald Taylor, John I. Powell, Lawrence Hunter, Richard Simon, and Edison T. Liu

A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis
Bioinformatics 2002 18: 774-775; doi:10.1093/bioinformatics/18.5.774 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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