Bioinformatics

ORIGINAL PAPERS:

Burkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, and Hans-Werner Mewes

Exon discovery by genomic sequence alignment
Bioinformatics 2002 18: 777-787; doi:10.1093/bioinformatics/18.6.777 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

A. Raval, Z. Ghahramani, and D. L. Wild

A Bayesian network model for protein fold and remote homologue recognition
Bioinformatics 2002 18: 788-801; doi:10.1093/bioinformatics/18.6.788 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ingolf Sommer, Alexander Zien, Niklas von Öhsen, Ralf Zimmer, and Thomas Lengauer

Confidence measures for protein fold recognition
Bioinformatics 2002 18: 802-812; doi:10.1093/bioinformatics/18.6.802 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

A. C. M. Luyf, J. de Gast, and A. H. C. van Kampen

Visualizing metabolic activity on a genome-wide scale
Bioinformatics 2002 18: 813-818; doi:10.1093/bioinformatics/18.6.813 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Shandar Ahmad and M. Michael Gromiha

NETASA: neural network based prediction of solvent accessibility
Bioinformatics 2002 18: 819-824; doi:10.1093/bioinformatics/18.6.819 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mor Peleg, Iwei Yeh, and Russ B. Altman

Modelling biological processes using workflow and Petri Net models
Bioinformatics 2002 18: 825-837; doi:10.1093/bioinformatics/18.6.825 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

A. M. Leontovich, L. I. Brodsky, V. A. Drachev, and V. K. Nikolaev

Adaptive algorithm of automated annotation
Bioinformatics 2002 18: 838-844; doi:10.1093/bioinformatics/18.6.838 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Maximilian Schlosshauer and Mattias Ohlsson

A novel approach to local reliability of sequence alignments
Bioinformatics 2002 18: 847-854; doi:10.1093/bioinformatics/18.6.847 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Upinder S. Bhalla

The chemical organization of signaling interactions
Bioinformatics 2002 18: 855-863; doi:10.1093/bioinformatics/18.6.855 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yi-Kuo Yu, Ralf Bundschuh, and Terence Hwa

Hybrid alignment: high-performance with universal statistics
Bioinformatics 2002 18: 864-872; doi:10.1093/bioinformatics/18.6.864 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eldar Giladi, Michael G. Walker, James Z. Wang, and Wayne Volkmuth

SST: an algorithm for finding near-exact sequence matches in time proportional to the logarithm of the database size
Bioinformatics 2002 18: 873-877; doi:10.1093/bioinformatics/18.6.873 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

DISCOVERY NOTES:

Ehud Gazit

Global analysis of tandem aromatic octapeptide repeats: The significance of the aromatic–glycine motif
Bioinformatics 2002 18: 880-883; doi:10.1093/bioinformatics/18.6.880 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Christiaan Karreman

AiO, combining DNA/protein programs and oligo-management
Bioinformatics 2002 18: 884-885; doi:10.1093/bioinformatics/18.6.884 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Matthew J. Gonzales, Jonathan M. Dugan, and Robert W. Shafer

Synonymous–non-synonymous mutation rates between sequences containing ambiguous nucleotides (Syn-SCAN)
Bioinformatics 2002 18: 886-887; doi:10.1093/bioinformatics/18.6.886 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Philippe Marc and Claude Jacq

Arrayplot for visualization and normalization of cDNA microarray data
Bioinformatics 2002 18: 888-889; doi:10.1093/bioinformatics/18.6.888 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Florian Burckhardt

MOUSE (Mitochondrial and Other Useful SEquences) a compilation of population genetic markers
Bioinformatics 2002 18: 890-891; doi:10.1093/bioinformatics/18.6.890 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

J. Dutheil and N. Galtier

BAOBAB: a Java editor for large phylogenetic trees
Bioinformatics 2002 18: 892-893; doi:10.1093/bioinformatics/18.6.892 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jeff P. Reeve and Bruce Rannala

DMLE+: Bayesian linkage disequilibrium gene mapping
Bioinformatics 2002 18: 894-895; doi:10.1093/bioinformatics/18.6.894 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ERRATUM:

DeFries–Fulker multiple regression analysis of sibship QTL data: a SAS^® macro
Bioinformatics 2002 18: 896; doi:10.1093/bioinformatics/18.6.896 [Print PDF][Screen PDF] [Request Permissions]  

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