Bioinformatics

EDITORIAL:

Burkhard Rost, Barry Honig, and Alfonso Valencia

Bioinformatics in structural genomics
Bioinformatics 2002 18: 897; doi:10.1093/bioinformatics/18.7.897 [Print PDF][Screen PDF] [Request Permissions]  

STRUCTURAL GENOMICS PAPER:

Elon Portugaly, Ilona Kifer, and Michal Linial

Selecting targets for structural determination by navigating in a graph of protein families
Bioinformatics 2002 18: 899-907; doi:10.1093/bioinformatics/18.7.899 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Federico Abascal and Alfonso Valencia

Clustering of proximal sequence space for the identification of protein families
Bioinformatics 2002 18: 908-921; doi:10.1093/bioinformatics/18.7.908 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jinfeng Liu and Burkhard Rost

Target space for structural genomics revisited
Bioinformatics 2002 18: 922-933; doi:10.1093/bioinformatics/18.7.922 [Abstract] [Print PDF][Screen PDF] Supplementary Material [Request Permissions]  

Manuel C. Peitsch

About the use of protein models
Bioinformatics 2002 18: 934-938; doi:10.1093/bioinformatics/18.7.934 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Xavier Fradera, Xavier de la Cruz, Carlos H. T. P. Silva, Jose Luis Gelpí, F.J. Luque, and Modesto Orozco

Ligand-induced changes in the binding sites of proteins
Bioinformatics 2002 18: 939-948; doi:10.1093/bioinformatics/18.7.939 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ORIGINAL PAPERS:

G. Charles Ostermeier, David J. Dix, and Stephen A. Krawetz

A bioinformatic strategy to rapidly characterize cDNA libraries
Bioinformatics 2002 18: 949-952; doi:10.1093/bioinformatics/18.7.949 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

J.M. Dodson, P.T. Charles, D.A. Stenger, and J.J. Pancrazio

Quantitative assessment of filter-based cDNA microarrays: gene expression profiles of human T-lymphoma cell lines
Bioinformatics 2002 18: 953-960; doi:10.1093/bioinformatics/18.7.953 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Adam B. Olshen and Ajay N. Jain

Deriving quantitative conclusions from microarray expression data
Bioinformatics 2002 18: 961-970; doi:10.1093/bioinformatics/18.7.961 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Fabrizio Lillo, Salvatore Basile, and Rosario N. Mantegna

Comparative genomics study of inverted repeats in bacteria
Bioinformatics 2002 18: 971-979; doi:10.1093/bioinformatics/18.7.971 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Alessandro Pintar, Oliviero Carugo, and Sándor Pongor

CX, an algorithm that identifies protruding atoms in proteins
Bioinformatics 2002 18: 980-984; doi:10.1093/bioinformatics/18.7.980 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jerry Tsai and Mark Gerstein

Calculations of protein volumes: sensitivity analysis and parameter database
Bioinformatics 2002 18: 985-995; doi:10.1093/bioinformatics/18.7.985 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

E. Demir, O. Babur, U. Dogrusoz, A. Gursoy, G. Nisanci, R. Cetin-Atalay, and M. Ozturk

PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways
Bioinformatics 2002 18: 996-1003; doi:10.1093/bioinformatics/18.7.996 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jan-Jaap Wesselink, Beatriz de la Iglesia, Stephen A. James, Jo L. Dicks, Ian N. Roberts, and Vic J. Rayward-Smith

Determining a unique defining DNA sequence for yeast species using hashing techniques
Bioinformatics 2002 18: 1004-1010; doi:10.1093/bioinformatics/18.7.1004 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Yuki Saka and Mariel Vázquez

TangleSolve: topological analysis of site-specific recombination
Bioinformatics 2002 18: 1011-1012; doi:10.1093/bioinformatics/18.7.1011 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Michael Bober, Kevin Wiehe, Christina Yung, Tugba Onal Suzek, Matthew Lin, William Baumgartner, Jr, and Raimond Winslow

CaGE: Cardiac gene expression knowledgebase
Bioinformatics 2002 18: 1013-1014; doi:10.1093/bioinformatics/18.7.1013 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

P. Tufféry

CS-PSeq-Gen: Simulating the evolution of protein sequence under constraints
Bioinformatics 2002 18: 1015-1016; doi:10.1093/bioinformatics/18.7.1015 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Grigory Kolesov, Hans-Werner Mewes, and Dmitrij Frishman

SNAPper: gene order predicts gene function
Bioinformatics 2002 18: 1017-1019; doi:10.1093/bioinformatics/18.7.1017 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

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