Bioinformatics

ORIGINAL PAPERS:

Pierre-François Baisnée, Steve Hampson, and Pierre Baldi

Why are complementary DNA strands symmetric?
Bioinformatics 2002 18: 1021-1033; doi:10.1093/bioinformatics/18.8.1021 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sanja Rogic, B.F. Francis Ouellette, and Alan K. Mackworth

Improving gene recognition accuracy by combining predictions from two gene-finding programs
Bioinformatics 2002 18: 1034-1045; doi:10.1093/bioinformatics/18.8.1034 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Atul A. Shah, Michael C. Giddings, Jasmin B. Parvaz, Raymond F. Gesteland, John F. Atkins, and Ivaylo P. Ivanov

Computational identification of putative programmed translational frameshift sites
Bioinformatics 2002 18: 1046-1053; doi:10.1093/bioinformatics/18.8.1046 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Gregory Stephanopoulos, Daehee Hwang, William A. Schmitt, Jatin Misra, and George Stephanopoulos

Mapping physiological states from microarray expression measurements
Bioinformatics 2002 18: 1054-1063; doi:10.1093/bioinformatics/18.8.1054 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Brad Love, David R. Rank, Sharron G. Penn, David A. Jenkins, and Russell S. Thomas

A conditional density error model for the statistical analysis of microarray data
Bioinformatics 2002 18: 1064-1072; doi:10.1093/bioinformatics/18.8.1064 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Shuta Tomida, Taizo Hanai, Hiroyuki Honda, and Takeshi Kobayashi

Analysis of expression profile using fuzzy adaptive resonance theory
Bioinformatics 2002 18: 1073-1083; doi:10.1093/bioinformatics/18.8.1073 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Bill C.H. Chang and Saman K. Halgamuge

Protein motif extraction with neuro-fuzzy optimization
Bioinformatics 2002 18: 1084-1090; doi:10.1093/bioinformatics/18.8.1084 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Pedro Gonnet and Frédérique Lisacek

Probabilistic alignment of motifs with sequences
Bioinformatics 2002 18: 1091-1101; doi:10.1093/bioinformatics/18.8.1091 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Nicola Cannata, Stefano Toppo, Chiara Romualdi, and Giorgio Valle

Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices
Bioinformatics 2002 18: 1102-1108; doi:10.1093/bioinformatics/18.8.1102 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Zheng Yuan and Rohan D. Teasdale

Prediction of Golgi Type II membrane proteins based on their transmembrane domains
Bioinformatics 2002 18: 1109-1115; doi:10.1093/bioinformatics/18.8.1109 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Tal Pupko, Itsik Pe'er, Masami Hasegawa, Dan Graur, and Nir Friedman

A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families
Bioinformatics 2002 18: 1116-1123; doi:10.1093/bioinformatics/18.8.1116 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Lorraine Tanabe and W. John Wilbur

Tagging gene and protein names in biomedical text
Bioinformatics 2002 18: 1124-1132; doi:10.1093/bioinformatics/18.8.1124 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Jeppe S. Spicker, Friedrik Wikman, Ming-Lan Lu, Carlos Cordon-Cardo, Christopher Workman, Torben F. Ørntoft, Søren Brunak, and Steen Knudsen

Neural network predicts sequence of TP53 gene based on DNA chip
Bioinformatics 2002 18: 1133-1134; doi:10.1093/bioinformatics/18.8.1133 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Boris Lenhard and Wyeth W. Wasserman

TFBS: Computational framework for transcription factor binding site analysis
Bioinformatics 2002 18: 1135-1136; doi:10.1093/bioinformatics/18.8.1135 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Eyal Seroussi, Micha Ron, and Darek Kedra

ShiftDetector: detection of shift mutations
Bioinformatics 2002 18: 1137-1138; doi:10.1093/bioinformatics/18.8.1137 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Junbai Wang, Vigdis Nygaard, Birgitte Smith-Sørensen, Eivind Hovig, and Ola Myklebost

MArray: analysing single, replicated or reversed microarray experiments
Bioinformatics 2002 18: 1139-1140; doi:10.1093/bioinformatics/18.8.1139 [Abstract] [Print PDF][Screen PDF] Supplementary data [Request Permissions]  

B. Contreras-Moreira and P.A. Bates

Domain Fishing: a first step in protein comparative modelling
Bioinformatics 2002 18: 1141-1142; doi:10.1093/bioinformatics/18.8.1141 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Farid Chetouani, Philippe Glaser, and Frank Kunst

DiffTool: building, visualizing and querying protein clusters
Bioinformatics 2002 18: 1143-1144; doi:10.1093/bioinformatics/18.8.1143 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yuh-Jyh Hu

The NCTU BioInfo Archive of biological data sets for bioinformatics research and experimentation
Bioinformatics 2002 18: 1145-1146; doi:10.1093/bioinformatics/18.8.1145 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Lichun Wang, Jean-Jack Riethoven, and Alan Robinson

XEMBL: distributing EMBL data in XML format
Bioinformatics 2002 18: 1147-1148; doi:10.1093/bioinformatics/18.8.1147 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Evgeny M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, and Thure Etzold

The EBI SRS server—new features
Bioinformatics 2002 18: 1149-1150; doi:10.1093/bioinformatics/18.8.1149 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ERRATUM:

Erratum
Bioinformatics 2002 18: 1151; doi:10.1093/bioinformatics/18.8.1151 [Print PDF][Screen PDF] [Request Permissions]  

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