Bioinformatics

ORIGINAL PAPERS:

Koichi Nishigaki and Ayumu Saito

Genome structures embossed by oligonucleotide-stickiness
Bioinformatics 2002 18: 1153-1161; doi:10.1093/bioinformatics/18.9.1153 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

A. J. Gavin, T. E. Scheetz, C. A. Roberts, B. O'Leary, T. A. Braun, V. C. Sheffield, M. B. Soares, J. P. Robinson, and T. L. Casavant

Pooled library tissue tags for EST-based gene discovery
Bioinformatics 2002 18: 1162-1166; doi:10.1093/bioinformatics/18.9.1162 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sündüz Keles, Mark van der Laan, and Michael B. Eisen

Identification of regulatory elements using a feature selection method
Bioinformatics 2002 18: 1167-1175; doi:10.1093/bioinformatics/18.9.1167 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

S. A. Rifkin and J. Kim

Geometry of gene expression dynamics
Bioinformatics 2002 18: 1176-1183; doi:10.1093/bioinformatics/18.9.1176 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Daehee Hwang, William A. Schmitt, George Stephanopoulos, and Gregory Stephanopoulos

Determination of minimum sample size and discriminatory expression patterns in microarray data
Bioinformatics 2002 18: 1184-1193; doi:10.1093/bioinformatics/18.9.1184 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Mario Medvedovic and Siva Sivaganesan

Bayesian infinite mixture model based clustering of gene expression profiles
Bioinformatics 2002 18: 1194-1206; doi:10.1093/bioinformatics/18.9.1194 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yidong Chen, Vishnu Kamat, Edward R. Dougherty, Michael L. Bittner, Paul S. Meltzer, and Jeffery M. Trent

Ratio statistics of gene expression levels and applications to microarray data analysis
Bioinformatics 2002 18: 1207-1215; doi:10.1093/bioinformatics/18.9.1207 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Danh V. Nguyen and David M. Rocke

Multi-class cancer classification via partial least squares with gene expression profiles
Bioinformatics 2002 18: 1216-1226; doi:10.1093/bioinformatics/18.9.1216 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Robert F. Stengel, Raffaele M. Ghigliazza, and Nilesh V. Kulkarni

Optimal enhancement of immune response
Bioinformatics 2002 18: 1227-1235; doi:10.1093/bioinformatics/18.9.1227 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yonil Park and John L. Spouge

The correlation error and finite-size correction in an ungapped sequence alignment
Bioinformatics 2002 18: 1236-1242; doi:10.1093/bioinformatics/18.9.1236 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Sam Griffiths-Jones and Alex Bateman

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs
Bioinformatics 2002 18: 1243-1249; doi:10.1093/bioinformatics/18.9.1243 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Christophe Lambert, Nadia Léonard, Xavier De Bolle, and Eric Depiereux

ESyPred3D: Prediction of proteins 3D structures
Bioinformatics 2002 18: 1250-1256; doi:10.1093/bioinformatics/18.9.1250 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Ville-Veikko Rantanen, Mats Gyllenberg, Timo Koski, and Mark S. Johnson

A dissimilarity matrix between protein atom classes based on Gaussian mixtures
Bioinformatics 2002 18: 1257-1263; doi:10.1093/bioinformatics/18.9.1257 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

APPLICATIONS NOTES:

Nick Moseyko and Lewis J. Feldman

VIZARD: analysis of Affymetrix Arabidopsis GeneChip® data
Bioinformatics 2002 18: 1264-1265; doi:10.1093/bioinformatics/18.9.1264 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Meena K. Sakharkar, Pandjassarame Kangueane, Dmitri A. Petrov, A. S. Kolaskar, and S. Subbiah

SEGE: A database on ‘intron less/single exonic’ genes from eukaryotes
Bioinformatics 2002 18: 1266-1267; doi:10.1093/bioinformatics/18.9.1266 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Yan Zhou, Guyang Matthew Huang, and Liping Wei

UniBLAST: a system to filter, cluster, and display BLAST results and assign unique gene annotation
Bioinformatics 2002 18: 1268; doi:10.1093/bioinformatics/18.9.1268 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Jens Kleinjung, Nigel Douglas, and Jaap Heringa

Parallelized multiple alignment
Bioinformatics 2002 18: 1270-1271; doi:10.1093/bioinformatics/18.9.1270 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Volker Hollich, Christian E. V. Storm, and Erik L. L Sonnhammer

OrthoGUI: graphical presentation of Orthostrapper results
Bioinformatics 2002 18: 1272-1273; doi:10.1093/bioinformatics/18.9.1272 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Oleksandr Buzko and Kevan M. Shokat

A kinase sequence database: sequence alignments and family assignment
Bioinformatics 2002 18: 1274-1275; doi:10.1093/bioinformatics/18.9.1274 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Iddo Friedberg and Hanah Margalit

PeCoP: automatic determination of persistently conserved positions in protein families
Bioinformatics 2002 18: 1276-1277; doi:10.1093/bioinformatics/18.9.1276 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Patrick McConnell, Kimberly Johnson, and Simon Lin

Applications of Tree-Maps to hierarchical biological data
Bioinformatics 2002 18: 1278-1279; doi:10.1093/bioinformatics/18.9.1278 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

Douglas S. Greer, John D. Westbrook, and Philip E. Bourne

An ontology driven architecture for derived representations of macromolecular structure
Bioinformatics 2002 18: 1280-1281; doi:10.1093/bioinformatics/18.9.1280 [Abstract] [Print PDF][Screen PDF] [Request Permissions]  

ERRATUM:

Erratum
Bioinformatics 2002 18: 1282; doi:10.1093/bioinformatics/18.9.1282 [Print PDF][Screen PDF] [Request Permissions]  

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